G548498


Basic Information

Item Value
gene id G548498
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77934078 ~ 77935551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621022
agaaacatgtctaaagcagggagccaacaagagtcagagggatagaaacatgtctaaagcagggagccaactagagtcagagggatagaaacatgtctaaagcagggagacaactagagtcagagggatagaaacatgtctaaagcagggagacaactagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagaggggagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagataggggagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacaactagagtcagagaggggagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggatagaaacatgtctaaagcagggagacagctagagtcagagggggagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621022 True 782 lncRNA 0.47 2 77934078 77935551

Neighbor

gene id symbol gene type direction distance location
LOC110526615 pcat2 coding upstream 67762 77848962 ~ 77866316 (+)
LOC110526614 mmp2 coding upstream 86281 77814375 ~ 77847797 (+)
LOC110526613 LOC106587615 coding upstream 203589 77723825 ~ 77730489 (+)
irx5a irx5 coding upstream 434645 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 895683 76827001 ~ 77038395 (+)
LOC118965105 NA coding downstream 27698 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 32616 77968167 ~ 78042147 (+)
LOC110525051 LOC106587608 coding downstream 151665 78087216 ~ 78088746 (+)
LOC110526620 lt4r1 coding downstream 153356 78088907 ~ 78090301 (+)
LOC110526621 LOC106587617 coding downstream 168344 78103895 ~ 78127426 (+)
G548472 NA non-coding upstream 76351 77856801 ~ 77857727 (+)
G548467 NA non-coding upstream 102402 77830897 ~ 77831676 (+)
G548466 NA non-coding upstream 106194 77827226 ~ 77827884 (+)
G548464 NA non-coding upstream 116241 77817615 ~ 77817837 (+)
G548570 NA non-coding downstream 181540 78117091 ~ 78117850 (+)
G548573 NA non-coding downstream 192642 78128193 ~ 78188167 (+)
G548642 NA non-coding downstream 312185 78247736 ~ 78248253 (+)
G548629 NA non-coding downstream 416457 78352008 ~ 78409500 (+)
G548000 NA other upstream 410655 77512609 ~ 77523423 (+)
G547884 NA other upstream 654724 77277992 ~ 77279354 (+)
G548703 NA other downstream 485309 78420860 ~ 78496470 (+)
G549342 NA other downstream 833705 78769256 ~ 78769907 (+)
G549345 NA other downstream 836561 78772112 ~ 78772557 (+)
LOC110526645 unc13c other downstream 1215813 79089592 ~ 79354959 (+)
G550054 NA other downstream 1543930 79479481 ~ 79480078 (+)

Expression


Co-expression Network