G548573


Basic Information

Item Value
gene id G548573
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78128193 ~ 78188167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621126
gatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggtagacaaatctccgtcccagtctcaggtcttttgcagactccatcagggtttctaCCTCAGTCCTCTGTTACCCCCTCCTCCTCGGATGATCGGAGGTGGTCCTGTCTACACGGTGCGCCGCATCATGGACTCCAGACGGTGGGGTCGAGGGTTCCAGTATTTAGTGGATTGGGAAGGAtatggtcctgaggagaggagttggattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621126 True 555 lncRNA 0.43 2 78128193 78188167

Neighbor

gene id symbol gene type direction distance location
LOC110526621 LOC106587617 coding upstream 767 78103895 ~ 78127426 (+)
LOC110526620 lt4r1 coding upstream 37892 78088907 ~ 78090301 (+)
LOC110525051 LOC106587608 coding upstream 39447 78087216 ~ 78088746 (+)
LOC110526617 LOC106562414 coding upstream 86046 77968167 ~ 78042147 (+)
LOC118965105 NA coding upstream 164890 77963249 ~ 77963303 (+)
LOC110526623 LOC106587623 coding downstream 32367 78220534 ~ 78224155 (+)
LOC110526624 LOC105022628 coding downstream 38196 78226363 ~ 78358769 (+)
LOC110526630 LOC106562411 coding downstream 178566 78366733 ~ 78379992 (+)
LOC110526629 LOC106562410 coding downstream 193217 78381384 ~ 78389020 (+)
LOC110526970 LOC105022633 coding downstream 201291 78389458 ~ 78477958 (+)
G548570 NA non-coding upstream 10343 78117091 ~ 78117850 (+)
G548498 NA non-coding upstream 192642 77934078 ~ 77935551 (+)
LOC110526615 pcat2 non-coding upstream 262325 77848962 ~ 77866316 (+)
G548472 NA non-coding upstream 270466 77856801 ~ 77857727 (+)
G548642 NA non-coding downstream 59569 78247736 ~ 78248253 (+)
G548629 NA non-coding downstream 163841 78352008 ~ 78409500 (+)
G548788 NA non-coding downstream 353126 78541293 ~ 78541498 (+)
G549207 NA non-coding downstream 359137 78547304 ~ 78547608 (+)
G549214 NA non-coding downstream 365331 78553498 ~ 78553802 (+)
LOC110526614 mmp2 other upstream 311132 77814375 ~ 77847797 (+)
G548000 NA other upstream 604770 77512609 ~ 77523423 (+)
G547884 NA other upstream 848839 77277992 ~ 77279354 (+)
LOC110526968 fto other upstream 1091880 76827001 ~ 77038395 (+)
G548703 NA other downstream 232693 78420860 ~ 78496470 (+)
G549342 NA other downstream 581089 78769256 ~ 78769907 (+)
G549345 NA other downstream 583945 78772112 ~ 78772557 (+)
LOC110526645 unc13c other downstream 963197 79089592 ~ 79354959 (+)
G550054 NA other downstream 1291314 79479481 ~ 79480078 (+)

Expression


Co-expression Network