Gene
RNA
| Item | Value |
|---|---|
| gene id | G549152 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 78450265 ~ 78452002 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transmembrane protein C15orf27 homolog, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU621767 | True | 956 | lncRNA | 0.41 | 2 | 78450265 | 78452002 |
78,447,600
78,448,000
78,448,400
78,448,800
78,449,200
78,449,600
78,450,000
78,450,400
78,450,800
78,451,200
78,451,600
78,452,000
78,452,400
78,452,800
78,453,200
78,453,600
78,454,000
78,454,400
78,454,800
78,455,200
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nfatc3a | LOC106562446 | coding | downstream | 234111 | 78135030 ~ 78216154 (-) |
| LOC110526619 | LOC100380762 | coding | downstream | 368968 | 78067960 ~ 78081297 (-) |
| LOC110526618 | LOC106587610 | coding | downstream | 383346 | 78041633 ~ 78066919 (-) |
| LOC110526616 | LOC106562417 | coding | downstream | 496840 | 77898575 ~ 77953425 (-) |
| LOC118965107 | NA | coding | downstream | 1115173 | 77335041 ~ 77335092 (-) |
| LOC110526971 | LOC100194695 | coding | upstream | 31940 | 78483942 ~ 78503059 (-) |
| LOC110526641 | LOC106587718 | coding | upstream | 224193 | 78676195 ~ 78683406 (-) |
| LOC110526644 | sc11a | coding | upstream | 256957 | 78708959 ~ 78717130 (-) |
| LOC110506760 | LOC106587719 | coding | upstream | 282752 | 78734754 ~ 78751924 (-) |
| LOC118964934 | NA | coding | upstream | 445937 | 78846909 ~ 78904244 (-) |
| G549129 | NA | non-coding | downstream | 35189 | 78413992 ~ 78415076 (-) |
| G549095 | NA | non-coding | downstream | 91555 | 78355685 ~ 78358710 (-) |
| G549091 | NA | non-coding | downstream | 97833 | 78351857 ~ 78352432 (-) |
| G548978 | NA | non-coding | downstream | 302496 | 78147305 ~ 78147769 (-) |
| G548904 | NA | non-coding | downstream | 317892 | 78125834 ~ 78132373 (-) |
| G549168 | NA | non-coding | upstream | 26238 | 78478240 ~ 78479043 (-) |
| G549188 | NA | non-coding | upstream | 72528 | 78524530 ~ 78524816 (-) |
| G549208 | NA | non-coding | upstream | 96282 | 78548284 ~ 78548488 (-) |
| G549223 | NA | non-coding | upstream | 111443 | 78563445 ~ 78563701 (-) |
| G549225 | NA | non-coding | upstream | 113168 | 78565170 ~ 78565376 (-) |
| G549115 | NA | other | downstream | 61260 | 78386484 ~ 78389005 (-) |
| G548797 | NA | other | downstream | 615910 | 77832289 ~ 77834355 (-) |
| G548203 | NA | other | downstream | 1053610 | 77393999 ~ 77396655 (-) |
| G547663 | NA | other | downstream | 1521796 | 76921954 ~ 76928469 (-) |
| G549505 | NA | other | upstream | 318360 | 78770362 ~ 78770910 (-) |
| G549637 | NA | other | upstream | 556627 | 79008629 ~ 79009085 (-) |
| G549638 | NA | other | upstream | 557271 | 79009273 ~ 79009702 (-) |
| G549640 | NA | other | upstream | 558213 | 79010215 ~ 79010770 (-) |
| G550403 | LOC106587663 | other | upstream | 1110782 | 79562784 ~ 79564013 (-) |
