G549227


Basic Information

Item Value
gene id G549227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78567350 ~ 78567580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621848
aagaaagagagaaagagagaattagagagagcatacttaaattcacacaggacaccggataagacaagagaagtactccagatataacaaactgaccctagccccctgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgatgatacccctggacagggccaaacaggaaggatataaccccacccactt

Function

NR:

description
ZK1236.4, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621848 True 231 lncRNA 0.48 1 78567350 78567580

Neighbor

gene id symbol gene type direction distance location
LOC110526639 LOC106587637 coding upstream 55366 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 89392 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 178330 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 187358 78366733 ~ 78379992 (+)
LOC110526624 LOC105022628 coding upstream 208581 78226363 ~ 78358769 (+)
LOC110526640 LOC106562467 coding downstream 89530 78657110 ~ 78676158 (+)
LOC110506124 LOC101474724 coding downstream 196027 78763607 ~ 78909743 (+)
LOC110526645 unc13c coding downstream 522012 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 957229 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 975499 79543079 ~ 79570938 (+)
G549224 NA non-coding upstream 3017 78564127 ~ 78564333 (+)
G549214 NA non-coding upstream 13548 78553498 ~ 78553802 (+)
G549207 NA non-coding upstream 19742 78547304 ~ 78547608 (+)
G548788 NA non-coding upstream 25852 78541293 ~ 78541498 (+)
G548629 NA non-coding upstream 157850 78352008 ~ 78409500 (+)
G549229 NA non-coding downstream 187 78567767 ~ 78568694 (+)
G549247 NA non-coding downstream 15579 78583159 ~ 78583444 (+)
G549271 NA non-coding downstream 73679 78641259 ~ 78641463 (+)
G549272 NA non-coding downstream 82598 78650178 ~ 78650401 (+)
G548703 NA other upstream 70880 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 701482 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 750289 77814375 ~ 77847797 (+)
G548000 NA other upstream 1043927 77512609 ~ 77523423 (+)
G547884 NA other upstream 1287996 77277992 ~ 77279354 (+)
G549342 NA other downstream 201676 78769256 ~ 78769907 (+)
G549345 NA other downstream 204532 78772112 ~ 78772557 (+)
G550054 NA other downstream 911901 79479481 ~ 79480078 (+)
LOC118936661 LOC106592882 other downstream 1004299 79571838 ~ 79577990 (+)

Expression


Co-expression Network