G549229


Basic Information

Item Value
gene id G549229
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78567767 ~ 78568694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621850
catgaaagagcaccagtaagccagtgactctgcccctgtaatagggttagaggcagagaatccccgtggagagaggggaaccggccagggagagacagcaagggcggttcgttgctccagagcctttccgttcaccttcacactcctgggccagactacactcaatcatatgacccactgaagagatgagtcttcagtaaagacttcaaggttgagaccgagtttgcgtctctcacatgggtaggcagaccattccataaaaatggagctctataggagaaagccctgcctccagctgtttgcttagaaattctagggacaattaggaggcctgcgtcttgtgactgtagcgtacgtgtaggtatgtacggcaggaccaaatcgtaagataggtaggagcaagcccatgtaatgctttgtaggtcagcagtaaaaccttgaaatcagcccttgccttaacaggaagccagtgtagggaggctagcactggagtaatatgatcacattttttggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagcaggaaagtagagcattgcagtagtctaaactagaagtaacaaaagcatggattaattgttctgcatcatttttgcaatgttatgtagatggaaaaaagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcagggtccagtgtaatgccgaggtccttcacagttttatttgagatgactgtacaaccatcaagatgaattgtcagattcaacagaagatctctttgtttcttgggacctagaacaagcatctccgttttgtccgagtttaaaattggaaagtttgcagccatcctcttccttatgtctgaaacacaggcttctagcgagggcaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621850 True 928 lncRNA 0.45 1 78567767 78568694

Neighbor

gene id symbol gene type direction distance location
LOC110526639 LOC106587637 coding upstream 55783 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 89809 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 178747 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 187775 78366733 ~ 78379992 (+)
LOC110526624 LOC105022628 coding upstream 208998 78226363 ~ 78358769 (+)
LOC110526640 LOC106562467 coding downstream 88416 78657110 ~ 78676158 (+)
LOC110506124 LOC101474724 coding downstream 194913 78763607 ~ 78909743 (+)
LOC110526645 unc13c coding downstream 520898 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 956115 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 974385 79543079 ~ 79570938 (+)
G549227 NA non-coding upstream 187 78567350 ~ 78567580 (+)
G549224 NA non-coding upstream 3434 78564127 ~ 78564333 (+)
G549214 NA non-coding upstream 13965 78553498 ~ 78553802 (+)
G549207 NA non-coding upstream 20159 78547304 ~ 78547608 (+)
G548788 NA non-coding upstream 26269 78541293 ~ 78541498 (+)
G549247 NA non-coding downstream 14465 78583159 ~ 78583444 (+)
G549271 NA non-coding downstream 72565 78641259 ~ 78641463 (+)
G549272 NA non-coding downstream 81484 78650178 ~ 78650401 (+)
G549280 NA non-coding downstream 111246 78679940 ~ 78683378 (+)
G548703 NA other upstream 71297 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 701899 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 750706 77814375 ~ 77847797 (+)
G548000 NA other upstream 1044344 77512609 ~ 77523423 (+)
G547884 NA other upstream 1288413 77277992 ~ 77279354 (+)
G549342 NA other downstream 200562 78769256 ~ 78769907 (+)
G549345 NA other downstream 203418 78772112 ~ 78772557 (+)
G550054 NA other downstream 910787 79479481 ~ 79480078 (+)
LOC118936661 LOC106592882 other downstream 1003185 79571838 ~ 79577990 (+)

Expression


Co-expression Network