G549280


Basic Information

Item Value
gene id G549280
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78679940 ~ 78683378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621904
TAGTCCGCAGGAGCTTTCCCGTATTGTGGCACAGCATCCAATCAGCCCAATGATAAACAGCAGAGTCCCGACTGCTATTATAATGGACGCTGGGATCAAGGTGTACACATCCTCAAAGAAGTGGTCATAGTCATCATATGTGATGAACACATAGGCTCCAATGTAACACAGAATTCCAGCTGCAGCCTCAGTGCAGTGGTAGGTTCTGCCCCACTGCCTTCTTCTTCTACAAAATCG

Function

NR:

description
Tetraspanin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621904 True 237 lncRNA 0.48 2 78679940 78683378

Neighbor

gene id symbol gene type direction distance location
LOC110526640 LOC106562467 coding upstream 3782 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 167956 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 201982 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 290920 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 299948 78366733 ~ 78379992 (+)
LOC110506124 LOC101474724 coding downstream 80229 78763607 ~ 78909743 (+)
LOC110526645 unc13c coding downstream 406214 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 841431 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 859701 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 888460 79571838 ~ 79577990 (+)
G549272 NA non-coding upstream 29539 78650178 ~ 78650401 (+)
G549271 NA non-coding upstream 38477 78641259 ~ 78641463 (+)
G549247 NA non-coding upstream 96496 78583159 ~ 78583444 (+)
G549229 NA non-coding upstream 111246 78567767 ~ 78568694 (+)
G549296 NA non-coding downstream 1909 78685287 ~ 78685488 (+)
G549297 NA non-coding downstream 4963 78688341 ~ 78688628 (+)
G549298 NA non-coding downstream 5294 78688672 ~ 78688894 (+)
G549304 NA non-coding downstream 17977 78701355 ~ 78701638 (+)
G549307 NA non-coding downstream 19912 78703290 ~ 78704213 (+)
G548703 NA other upstream 183470 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 814072 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 862879 77814375 ~ 77847797 (+)
G548000 NA other upstream 1156517 77512609 ~ 77523423 (+)
G547884 NA other upstream 1400586 77277992 ~ 77279354 (+)
G549342 NA other downstream 85878 78769256 ~ 78769907 (+)
G549345 NA other downstream 88734 78772112 ~ 78772557 (+)
G550054 NA other downstream 796103 79479481 ~ 79480078 (+)

Expression


Co-expression Network