G549342


Basic Information

Item Value
gene id G549342
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78769256 ~ 78769907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621974
tatcagtggtgacagtgattcctatcttcagtgcagtgggcagctgggaggaggtgcgcttattctccatggactttacagtgtcccagaacttttttgagttagtgttgcaggaagcacatttctgcttgaaaaagctagccttggcttttctaactgcctgtgtataatggtttctagcttccctgaacagttgtatatcacgggggctgttcgatgctaatgcagaatgccataggatgtttttgtgttggttaagggcagtcaggtctggggagaaccaagggctatatctgttcctggttctacatttcttgaatggggcatgcttatttaagatggtgaggaaggcatttttaaagaataaccaggcatcctctactgacgggatgagatcaatatccttccaggataccccggccaggtcgattagaaaggcctgctcgctgaagtgtttcagggagtgtttgacagtgatgagtggaggtcgtttgaccgctgacccattacggatgcaggcaatgaggcagtgatcgctgagatcttggttgaagacagcagaggtgtatttagagggcaagttggttaggatgatatctatgagggtgcccgtgtttaaggctttgtggaggtacctggtaggttcattgat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU621974 True 652 TUCP 0.47 1 78769256 78769907

Neighbor

gene id symbol gene type direction distance location
LOC110526640 LOC106562467 coding upstream 93098 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 257272 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 291298 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 380236 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 389264 78366733 ~ 78379992 (+)
LOC110526645 unc13c coding downstream 319685 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 754902 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 773172 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 801931 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 808615 79578522 ~ 79671531 (+)
G549340 NA non-coding upstream 2624 78766395 ~ 78766632 (+)
G549307 NA non-coding upstream 65043 78703290 ~ 78704213 (+)
G549304 NA non-coding upstream 67618 78701355 ~ 78701638 (+)
G549298 NA non-coding upstream 80362 78688672 ~ 78688894 (+)
G549297 NA non-coding upstream 80628 78688341 ~ 78688628 (+)
G549344 NA non-coding downstream 1322 78771229 ~ 78771716 (+)
G549348 NA non-coding downstream 5364 78775271 ~ 78775505 (+)
G549352 NA non-coding downstream 16207 78786114 ~ 78786335 (+)
G549353 NA non-coding downstream 16643 78786550 ~ 78786809 (+)
G549354 NA non-coding downstream 22055 78791962 ~ 78798188 (+)
G548703 NA other upstream 272786 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 903388 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 952195 77814375 ~ 77847797 (+)
G548000 NA other upstream 1245833 77512609 ~ 77523423 (+)
G547884 NA other upstream 1489902 77277992 ~ 77279354 (+)
G549345 NA other downstream 2205 78772112 ~ 78772557 (+)
G550054 NA other downstream 709574 79479481 ~ 79480078 (+)
G550265 NA other downstream 1298841 80068748 ~ 80069285 (+)

Expression


Co-expression Network