G549405


Basic Information

Item Value
gene id G549405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78907695 ~ 78907962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622044
gtgtgagagtgaaacCTATGATCTTCCATGAGGACTCTGATTCTCCCCCTGGATCGTTTTAAATTCTGGCTGAGCTCTCTATTTTCACATTAACACTCTGGGTTACAGAGGAGATCCTGCCTCTCATCCCAAAGGTCTCCTGACTCAGGGATTGACATGAATAACTAGATCTGAACACTGAACTGAGAGACACAATATCTGTTATGTGGATTCACTATTTGTGTAATAGGAGTTGTTGCTCATTGTCTTTATGATGGGATACATTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622044 True 268 lncRNA 0.41 1 78907695 78907962

Neighbor

gene id symbol gene type direction distance location
LOC110526640 LOC106562467 coding upstream 231537 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 395711 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 429737 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 518675 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 527703 78366733 ~ 78379992 (+)
LOC110526645 unc13c coding downstream 181630 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 616847 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 635117 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 663876 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 670560 79578522 ~ 79671531 (+)
G549370 LOC105030512 non-coding upstream 57910 78844934 ~ 78849785 (+)
G549368 NA non-coding upstream 84713 78822764 ~ 78822982 (+)
G549362 NA non-coding upstream 94384 78813084 ~ 78813311 (+)
G549354 NA non-coding upstream 109507 78791962 ~ 78798188 (+)
G549353 NA non-coding upstream 120886 78786550 ~ 78786809 (+)
LOC110506124 LOC101474724 non-coding downstream 512 78763607 ~ 78909743 (+)
G549338 NA non-coding downstream 1916 78909878 ~ 78912701 (+)
G549406 NA non-coding downstream 5107 78913069 ~ 78913410 (+)
G549413 NA non-coding downstream 11596 78919558 ~ 78919879 (+)
G549595 NA non-coding downstream 47369 78955331 ~ 78955681 (+)
G549345 NA other upstream 135138 78772112 ~ 78772557 (+)
G549342 NA other upstream 137788 78769256 ~ 78769907 (+)
G548703 NA other upstream 411225 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1041827 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1090634 77814375 ~ 77847797 (+)
G550054 NA other downstream 571519 79479481 ~ 79480078 (+)
G550265 NA other downstream 1160786 80068748 ~ 80069285 (+)
G550305 NA other downstream 1292208 80200170 ~ 80200529 (+)

Expression


Co-expression Network