G549338


Basic Information

Item Value
gene id G549338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78909878 ~ 78912701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU621969
TCAATTCGCCGGGGCATGAACtcaacaaggtgttgaaagcgttccacatggatgctggcccatgttgactccaatgcttcccacagtcaaattagctggatgtcctttgggtggtggacccttcttgatacacacggggaactgttgagcatgaaaaccccagcagcgttgcagttcatgacacaaactggtgtgcctggcacctactaccataccccattcaagggcacttaaatcttttgtcttgcccattcaccctctgaatggcacccatacacaatccatgtctcaattgtctcgaggcttaaaaataattctataacctgtctcctccccttcatctacactgattgaagtagatttaactagtgacatcaataagggaggCTTTCACCTGgtgagtctatgtcatggaaagagtaggtgttcttaatgttttgtacactcagtgtactatACTGTCTTGTAAGAATGTTGAAAAATATCTGTGTAATGACTGTGGGTGTCTTAAACTTGGTTTATAGTTTGTTTGTTAGTTAAACATCATTACAAATTGGCATGGAACAATCAAGAGACAGTCATACagtacatcaaaactataaacCAAATAAATGGAATTGTGGTGTTTTCTGATTTCAAATGGCATCAGATAGAATACTGTTACCAATTATTTTAATCAATGTATAAAAACTAGCAAtcatgagtttaaaaaaaaaaactttcaatCAAACTAGATGCAATGGTGTTCTTTGTTATTATCATGTGACCTGGAAAGTACAGTAGGGGGTAGAACACAGTGGTCAACCTCTTGAAAACACTGACTAGATGTGCAATACTATAACGATAAAAACAATGAGTATTTTACGGTTGGATATGGTACATTTTAGTTTATTAAATGTGCActttgaaataaataattctggtTATTTTCCAAAGGTATAAGAAAATGAAAATGCCTGCTGTGAACATGCCTAGGtgaaaaatacatttcaacttgTAGTTGTGCTAATGCATTGGgttattttaaaatgttgaatATATTGAAGTCCTGCTGAATTATTTTGTACAAAGTAGAGTCTCCTTATATTTAGAGTTTTCCTTGTATAACCTATTTTAACTGAACTAATGTTATTTTTTATCATTGACAATGATACTGTTTTAGCGCAGTGATTCAGATGAGGACTAGAATTCAAAGAAAAGTAGGTAGAGATTCAGGGACGGTTTCCCGGACCCATATTAAGCCTACACCTGAGCTATGGCATCCTTAATGGTGCATCTCCATTCAAAGTGCTTTGTAGTCTAGGAATCGGTTTAATCTGGGCCAGGGAACGTTTTTGTCAGGTTTACCTCCAAATCCACCTAAGGGAGCATTATACCCTCTCATTTTCACACTGTCTTTACATGTCTACCAAAGATACCTCTCTGCAGCCTCAGTGGTACTTCACACGAGATCTAGAGTTCCTGAGGAGGGTTTGGGAGAGGGTTGACTAGTGAAGAGCTGCAGAACAGGACAATGATAATCACTGCAAGTTTCTATTATATTGTCCTTAGCCGGCACTCTATCTGTTGGCTTAGAATAAACAAGTTGAGAGAGGGAATTGCATCGACTTAGGGTTTAAAAATTCTGGAAAATGTCCCCAAATTACCATGctttccaggaatcccagttggAATATTACTGGAAGCAGAAAATCCGGAATCCTTGTTACAGGAATTCTGGAATTCTGGTAAAGTGATCTGAAATTTTGCAATCCTATGTAGACTCAAGATAAAAATATATTTCTACATCATAATTTGGTTTTGCATCAGCACAATCCTATCAGACATAATATTGTTTTAATGTTATAATCCCTCAGTAGACTAGTGTATGGTGGGTTTAATAAATAATATAGATTTATGAATTAATGTGGTCTGCTATGCAGCAATATTAAGATAATGATAAGTGGTTGGTCCCTGATTGGTGTATCAGATTAAAGTGATTGATTTTGTTTGAAGTTGTGGAAGGCCAGTCAAGGCAGAATATTTAGATTTTTAGATCTCAGTTCGCAACTTTGAATTTCAGTTCAATGTGTATGACAAACAATACAACCTTATTTGAGCAATAATGAAAACATTTGAAAATAATTCAATGTTGAAATCAATGTGGGCAGCTACAGACAGAAAAAGTAAGTGATGTTTTTCGGTTTGTTTTGATGTGTTCTCCTGTCTTTCCATATAGGATCACTGGATATTCAAGTGACATGTTTTTCATGATTTGCCTACGTACCGTTATACTGGTGAACCTAGCTTCTTTAATGCATGGGATGAGATGATGATGAGAAGATGGTGTAGCAGTAACATGCAGCTCAGTGTTGATTGCAATGGGTGCGTTCCAGGTTGTTGCAGTCATGCTTCACATCTCAAAAGATCGCTATAAATCAATAGCAATATCATATCAGTGTGGTTCCGGAGATGTGCAAACATGTCTCCAGGGGTCGTATTCACTAGAAACCAAACTGAAGaaacaaacagggagggactaccttaACTTAATTTTTTCTTTGCAAGACATTTTCCTACGGTGTGTGCACCAATGAATACTAGCGATCCAGGTGGTAAGATCTGACAATCTGAGCATGTGACTGCAATGAAGACGACCTGGAACGTCCCCAATGACTCCAGTGTTAGGAACACCCAGACAGCCTCTGCAATGTCCTTCTGTTAGCTCCCTTACTGTCTCATGGCCATGCATATGGATCGGTCTCTGTAAGCATGTCTTCTGTATTTCTGTTGTTACTCCCAATTAAGACTGAATATTTTTTATCACAGAATGAAGACTGGTGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU621969 True 2824 lncRNA 0.38 1 78909878 78912701

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 541 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 233720 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 397894 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 431920 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 520858 78381384 ~ 78389020 (+)
LOC110526645 unc13c coding downstream 176891 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 612108 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 630378 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 659137 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 665821 79578522 ~ 79671531 (+)
G549405 NA non-coding upstream 1916 78907695 ~ 78907962 (+)
G549370 LOC105030512 non-coding upstream 60093 78844934 ~ 78849785 (+)
G549368 NA non-coding upstream 86896 78822764 ~ 78822982 (+)
G549362 NA non-coding upstream 96567 78813084 ~ 78813311 (+)
G549406 NA non-coding downstream 368 78913069 ~ 78913410 (+)
G549413 NA non-coding downstream 6857 78919558 ~ 78919879 (+)
G549595 NA non-coding downstream 42630 78955331 ~ 78955681 (+)
G549618 NA non-coding downstream 69954 78982655 ~ 78983233 (+)
G549634 NA non-coding downstream 94357 79007058 ~ 79007728 (+)
G549345 NA other upstream 137321 78772112 ~ 78772557 (+)
G549342 NA other upstream 139971 78769256 ~ 78769907 (+)
G548703 NA other upstream 413408 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1044010 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1092817 77814375 ~ 77847797 (+)
G550054 NA other downstream 566780 79479481 ~ 79480078 (+)
G550265 NA other downstream 1156047 80068748 ~ 80069285 (+)
G550305 NA other downstream 1287469 80200170 ~ 80200529 (+)

Expression


Co-expression Network