G549406


Basic Information

Item Value
gene id G549406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78913069 ~ 78913410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622045
cctttgccttgatgacagctttgcacactcttggcattctttcaaccagcttcatgatgcttttccaacagtcttggagttcccacatatgctgagaacttgttggctgcttttccttcactctacggtccaactcatcccaaaccatctcaattgggttgaggtcaggtgattgtggaggccaggtcatccgatgcagcactccatcactctcattggtaaaatagcccttacacagcctggagatgtgttttgggtcattgtcctgttgaaaaacaaatgatagccccgCTAagtacaaaccagatgggatggcgtatcgctgcagaatgccgtggtagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622045 True 342 lncRNA 0.48 1 78913069 78913410

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 3732 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 236911 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 401085 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 435111 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 524049 78381384 ~ 78389020 (+)
LOC110526645 unc13c coding downstream 176182 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 611399 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 629669 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 658428 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 665112 79578522 ~ 79671531 (+)
G549338 NA non-coding upstream 368 78909878 ~ 78912701 (+)
G549405 NA non-coding upstream 5107 78907695 ~ 78907962 (+)
G549370 LOC105030512 non-coding upstream 63284 78844934 ~ 78849785 (+)
G549368 NA non-coding upstream 90087 78822764 ~ 78822982 (+)
G549413 NA non-coding downstream 6148 78919558 ~ 78919879 (+)
G549595 NA non-coding downstream 41921 78955331 ~ 78955681 (+)
G549618 NA non-coding downstream 69245 78982655 ~ 78983233 (+)
G549634 NA non-coding downstream 93648 79007058 ~ 79007728 (+)
G549636 NA non-coding downstream 95093 79008503 ~ 79008943 (+)
G549345 NA other upstream 140512 78772112 ~ 78772557 (+)
G549342 NA other upstream 143162 78769256 ~ 78769907 (+)
G548703 NA other upstream 416599 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1047201 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1096008 77814375 ~ 77847797 (+)
G550054 NA other downstream 566071 79479481 ~ 79480078 (+)
G550265 NA other downstream 1155338 80068748 ~ 80069285 (+)
G550305 NA other downstream 1286760 80200170 ~ 80200529 (+)

Expression


Co-expression Network