G549618


Basic Information

Item Value
gene id G549618
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78982655 ~ 78983233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622277
cctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacataacgtttagcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccatatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctccatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccagttcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatctggct

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622277 True 579 lncRNA 0.44 1 78982655 78983233

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 73318 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 306497 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 470671 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 504697 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 593635 78381384 ~ 78389020 (+)
LOC110526645 unc13c coding downstream 106359 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 541576 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 559846 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 588605 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 595289 79578522 ~ 79671531 (+)
G549595 NA non-coding upstream 26974 78955331 ~ 78955681 (+)
G549413 NA non-coding upstream 62776 78919558 ~ 78919879 (+)
G549406 NA non-coding upstream 69245 78913069 ~ 78913410 (+)
G549338 NA non-coding upstream 69954 78909878 ~ 78912701 (+)
G549634 NA non-coding downstream 23825 79007058 ~ 79007728 (+)
G549636 NA non-coding downstream 25270 79008503 ~ 79008943 (+)
G549641 NA non-coding downstream 29495 79012728 ~ 79013805 (+)
G549649 NA non-coding downstream 36618 79019851 ~ 79020098 (+)
G549656 NA non-coding downstream 42064 79025297 ~ 79025556 (+)
G549345 NA other upstream 210098 78772112 ~ 78772557 (+)
G549342 NA other upstream 212748 78769256 ~ 78769907 (+)
G548703 NA other upstream 486185 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1116787 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1165594 77814375 ~ 77847797 (+)
G550054 NA other downstream 496248 79479481 ~ 79480078 (+)
G550265 NA other downstream 1085515 80068748 ~ 80069285 (+)
G550305 NA other downstream 1216937 80200170 ~ 80200529 (+)

Expression


Co-expression Network