G549666


Basic Information

Item Value
gene id G549666
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79037295 ~ 79038815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622326
aaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatgttgggtaaccagctgcatattttagatcacaagcttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaatttttttttggggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaatatttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaacaaaaagaaatatgtaatacaagttgaccaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtatctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcac
>TU622327
aaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatgttgggtaaccagctgcatattttagatcacaagcttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaatttttttttggggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaatatttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaacaaaaagaaatatgtaatacaagttgaccaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtatctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622326 False 827 lncRNA 0.34 3 79037295 79038815
TU622327 True 827 lncRNA 0.34 2 79037295 79038815

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 127958 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 361137 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 525311 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 559337 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 648275 78381384 ~ 78389020 (+)
LOC110526645 unc13c coding downstream 50777 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 485994 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 504264 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 533023 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 539707 79578522 ~ 79671531 (+)
G549663 NA non-coding upstream 5574 79030759 ~ 79031721 (+)
G549656 NA non-coding upstream 11739 79025297 ~ 79025556 (+)
G549649 NA non-coding upstream 17197 79019851 ~ 79020098 (+)
G549641 NA non-coding upstream 23490 79012728 ~ 79013805 (+)
G549636 NA non-coding upstream 28352 79008503 ~ 79008943 (+)
G549682 NA non-coding downstream 41355 79080170 ~ 79080479 (+)
G549683 NA non-coding downstream 42851 79081666 ~ 79082012 (+)
G549778 NA non-coding downstream 128253 79167068 ~ 79168610 (+)
G549794 NA non-coding downstream 154059 79192874 ~ 79193622 (+)
G549345 NA other upstream 264738 78772112 ~ 78772557 (+)
G549342 NA other upstream 267388 78769256 ~ 78769907 (+)
G548703 NA other upstream 540825 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1171427 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1220234 77814375 ~ 77847797 (+)
G550054 NA other downstream 440666 79479481 ~ 79480078 (+)
G550265 NA other downstream 1029933 80068748 ~ 80069285 (+)
G550305 NA other downstream 1161355 80200170 ~ 80200529 (+)

Expression


Co-expression Network