G549778


Basic Information

Item Value
gene id G549778
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79167068 ~ 79168610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622448
TCTCCctttccactcctccctctccctttccacatcaccctctgtctctctgctacccctctctctctcccccttttctccctttccACTCCTCCCGCTCCCTTTCCACaacaccctctctctctctgctacccctctctctctcccccttttctcccttttcactcctccctctccctttccacatcaccctctctctctctgctacccctctctctctcccccttttctccctttccactcctccctctccctttccacatcacgctctctctctccgctacccctctctctctcccccttttttccctttccactcctccctctccctttccacatcaccctctcgctctccgctacccctctctctctcccccttttctccctttccactcctccctctccctttccaaatcaccctcgctctctctgctacccctctctctctcccccttttctccctttccactccttcctctccctttccacatcacgctctctctctccgctacccctctctctctcccccttttctccctttccactcctccctctccctttccacatcaccctctcgctctccgctacccctctctctctcccccttttctccctttccactcctccctctccctttccacatcaccctctctctctccgctacccctctctctctcccccttttctccctttccactcctccctctccctttccacatcaccctctctctctccactacccctccttctctcccccttttctccctttccactcctccctctccctttccacatcaccctctctctctccactacccctccttctctcccccttttctccctttccactcctccctctccctttccacatcaccctctcgctctccgctacccctctctctctcccacttttctccctttccactcctccctctccctttccacatcaccctctctctctccactacctctccttctctcccccttttctccctttccactcctccctctccctttccacatcaccctctctctctctgctacccctctctctctcccccttttctccctttccactcctccctctccctttccacatcaccctctctctctctgctacccctctctctcgcccccttttctcccttttcactctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622448 True 1161 lncRNA 0.57 3 79167068 79168610

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 257731 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 490910 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 655084 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 689110 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 778048 78381384 ~ 78389020 (+)
LOC110506775 LOC106562487 coding downstream 356199 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 374469 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 403228 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 409912 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 503419 79672029 ~ 79699222 (+)
LOC110526645 unc13c non-coding upstream 4037 79089592 ~ 79354959 (+)
G549683 NA non-coding upstream 85056 79081666 ~ 79082012 (+)
G549682 NA non-coding upstream 86589 79080170 ~ 79080479 (+)
G549666 NA non-coding upstream 128253 79037295 ~ 79038815 (+)
G549663 NA non-coding upstream 135347 79030759 ~ 79031721 (+)
G549794 NA non-coding downstream 24264 79192874 ~ 79193622 (+)
G549817 NA non-coding downstream 89263 79257873 ~ 79317374 (+)
G549783 NA non-coding downstream 109847 79278457 ~ 79282978 (+)
G549837 NA non-coding downstream 154321 79322931 ~ 79324958 (+)
G549840 NA non-coding downstream 168517 79337127 ~ 79345011 (+)
G549345 NA other upstream 394511 78772112 ~ 78772557 (+)
G549342 NA other upstream 397161 78769256 ~ 78769907 (+)
G548703 NA other upstream 670598 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1301200 77848962 ~ 77866316 (+)
G550054 NA other downstream 310871 79479481 ~ 79480078 (+)
G550265 NA other downstream 900138 80068748 ~ 80069285 (+)
G550305 NA other downstream 1031560 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 1246837 80415414 ~ 80430972 (+)

Expression


Co-expression Network