G549837


Basic Information

Item Value
gene id G549837
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79322931 ~ 79324958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622516
ccttattttacagaacactagtcagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagacagagaccagcggttaaaaccttattttacagaacaccagtcagacagagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagaccagcggttaaaaccttattttacagaacactagtcagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagacagagaccagcagttaaaaccttattttacagaacactagtcagacagagacagagaccagcagttaaaaccttattttacagaacactagtcagtcagagaccagcggtttaaaccttattttacagaacactagtcagacagagacagagaccagcggtttaaaccttattttacagaacactagtcagacagagaccagcggttaaaaccttattttacagaacactagtcagacagagacagagaccagcggtttaaaccttattttacagaacactagtcagtcagagacagaccCCAGtggttaaaaccttattttacagaacactagtcagtcagagacagagaccagtggttaaaaccttattttacagaacactagtcagacagagaccagcggttaaaaccttttttacagaacactagtcagacagagacagagaccagtggtttaaaccttattttacagaacactagtcagtcagagacagagaccagcggtttaaaccttattttacagaacactagtcagtcagagacagagaccagtggttaaaaccttattttacagaacactagtc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606497 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622516 True 943 lncRNA 0.40 2 79322931 79324958

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 413594 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 646773 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 810947 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 844973 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 933911 78381384 ~ 78389020 (+)
LOC110506775 LOC106562487 coding downstream 199851 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 218121 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 246880 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 253564 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 347071 79672029 ~ 79699222 (+)
G549817 NA non-coding upstream 5557 79257873 ~ 79317374 (+)
G549783 NA non-coding upstream 39953 79278457 ~ 79282978 (+)
G549794 NA non-coding upstream 129309 79192874 ~ 79193622 (+)
G549778 NA non-coding upstream 154321 79167068 ~ 79168610 (+)
LOC110526645 unc13c non-coding upstream 159900 79089592 ~ 79354959 (+)
G549840 NA non-coding downstream 12169 79337127 ~ 79345011 (+)
G549841 NA non-coding downstream 20713 79345671 ~ 79346084 (+)
G549779 NA non-coding downstream 30091 79355049 ~ 79356445 (+)
G549974 NA non-coding downstream 50022 79374980 ~ 79375277 (+)
G549983 NA non-coding downstream 66432 79391390 ~ 79401647 (+)
G549345 NA other upstream 550374 78772112 ~ 78772557 (+)
G549342 NA other upstream 553024 78769256 ~ 78769907 (+)
G548703 NA other upstream 826461 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1457063 77848962 ~ 77866316 (+)
G550054 NA other downstream 154523 79479481 ~ 79480078 (+)
G550265 NA other downstream 743790 80068748 ~ 80069285 (+)
G550305 NA other downstream 875212 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 1090489 80415414 ~ 80430972 (+)

Expression


Co-expression Network