G549779


Basic Information

Item Value
gene id G549779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79355049 ~ 79356445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622449
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggccgACAGTTGAGGAGTTGTGTTGTCTGTTTTTGTGCATGTGCGTAAAACATCTGTTGGAATGTTCATTTTAAACTACAGTATGTACCAGTGTTTACTTACCGTATGCTCAATATTAAGTACTATATTCTACGAGTTATGTTAACGAGACATGAAATACCTTTTTGTAAAACATTTAGATTTGTTCCAATAAAGTGCcaaaccagaggaaaaaaaagtacaacaacaaaacaaacaacaaaagatAGTAGTGATGAATTATGGTGATACTAAATGTTTGATGAAAAATTTGCTTGATTATTTGGTTCAGTGTAAAATCATTCTCTCAAAGAAACGGTGGCGTTTTAATCGTTAAAAAGTCCATTTGCACCCTCGTTTTGTTACTCGTCCCCTCACACAGCACTTGTTGTGCATGTCCCCGTTTACAACCATGTCTCTTCCATCATCTCACAGTGACCACAGGGTCGGGGTCCATGTACCCTGGCCCTAAAACTCTTTGTATTTAAGCCGAAACCTGAAAAGAGACCATTTTTTTAACGGCGATGACTGCTATGTAAACCTTCATAGGTGTTTGTAATTTTATAACCATGACAACAACGAAAAGCCTCCAGTGCTGTCAGTCTACACAGAAAGGGTGGATCCTATTTTCTCGTTTTCTTTTTGCCTGTAATCTTTCCGTTCGGCCATCGGCTTCCAGCCTTTCTGTACGACCACTGTGAACACGAGCTTTGGAAGGCAAGCCTACATAACATTGCTGACGGTTTGATATTGTTGTTTCATATTTATTAAGATAACTTTGTTCCTGAGAAACTGCCAAAGTTATATAAAAATGTTTGTACAAAAGCAATCCATTACATGtatgaaaaatatatatgtacACGTCAACTATTTAGTTTTACAATGCTAAATATCTGATTGTTGATGGGCGGTTCTAGAACTATTGTTTTGAGTTTGTGTGAAGATTTCAGAGTCGCAAAATGTTACTTTACACATGAGTTTAATTCAGCTTCTGCCATTTGGTTTATTTTTCTTCATAAAGGAACGAGTCTAACATTGGGTAAATATGCAACATTCCTATGTATTGCACTGATGGCGAATTGTATGTCATGTAaatatatttagtgagaaattgTACAAAA
>TU622450
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggccgACAGTTGAGGAGTTGTGTTGTCTGTTTTTGTGCATGTGCGTAAAACATCTGTTGGAATGTTCATTTTAAACTACAGTATGTACCAGTGTTTACTTACCGTATGCTCAATATTAAGTACTATATTCTACGAGTTATGTTAACGAGACATGAAATACCTTTTTGTAAAACATTTAGATTTGTTCCAATAAAGTGCcaaaccagaggaaaaaaaagtacaacaacaaaacaaacaacaaaagatAGTAGTGATGAATTATGGTGATACTAAATGTTTGATGAAAAATTTGCTTGATTATTTGGTTCAGTGTAAAATCATTCTCTCAAAGAAACGGTGGCGTTTTAATCGTTAAAAAGTCCATTTGCACCCTCGTTTTGTTACTCGTCCCCTCACACAGCACTTGTTGTGCATGTCCCCGTTTACAACCATGTCTCTTCCATCATCTCACAGTGACCACAGGGTCGGGGTCCATGTACCCTGGCCCTAAAACTCTTTGTATTTAAGCCGAAACCTGAAAAGAGACCATTTTTTTAACGGCGATGACTGCTATGTAAACCTTCATAGGTGTTTGTAATTTTATAACCATGACAACAACGAAAAGCCTCCAGTGCTGTCAGTCTACACAGAAAGGGTGGATCCTATTTTCTCGTTTTCTTTTTGCCTGTAATCTTTCCGTTCGGCCATCGGCTTCCAGCCTTTCTGTACGACCACTGTGAACACGAGCTTTGGAAGGCAAGCCTACATAACATTGCTGACGGTTTGATATTGTTGTTTCATATTTATTAAGATAACTTTGTTCCTGAGAAACTGCCAAAGTTATATAAAAATGTTTGTACAAAAGCAATCCATTACATGtatgaaaaatatatatgtacACGTCAACTATTTAGTTTTACAATGCTAAATATCTGATTGTTGATGGGCGGTTCTAGAACTATTGTTTTGAGTTTGTGTGAAGATTTCAGAGTCGCAAAATGTTACTTTACACATGAGTTTAATTCAGCTTCTGCCATTTGGTTTATTTTTCTTCATAAAGGAACGAGTCTAACATTGGGTAAATATGCAACATTCCTATGTATTGCACTGATGGCGAATTGTATGTCATGTAaatatatttagtgagaaattgTACAAAACAACCGTCTCCTTTATTTCCAACACATTGTTcaaagtgtttttttgttgttgtttagtaATCTGATACATTCATTCAGTGATATAATCCTATATGGTGTAgcctctatatacagtatctattgCCAGAAGAAATGTCACGTCTCAAATGGAATGACAGAGTAATGTACCGTATggcccacagagatcctataaaTCACTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622449 False 1195 lncRNA 0.37 1 79355049 79356243
TU622450 True 1397 lncRNA 0.37 1 79355049 79356445

Neighbor

gene id symbol gene type direction distance location
LOC110526645 unc13c coding upstream 90 79089592 ~ 79354959 (+)
LOC110506124 LOC101474724 coding upstream 445712 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 678891 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 843065 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 877091 78389458 ~ 78477958 (+)
LOC110506775 LOC106562487 coding downstream 168364 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 186634 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 215393 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 222077 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 315584 79672029 ~ 79699222 (+)
G549841 NA non-coding upstream 8965 79345671 ~ 79346084 (+)
G549840 NA non-coding upstream 10038 79337127 ~ 79345011 (+)
G549837 NA non-coding upstream 30091 79322931 ~ 79324958 (+)
G549817 NA non-coding upstream 37675 79257873 ~ 79317374 (+)
G549783 NA non-coding upstream 72071 79278457 ~ 79282978 (+)
G549974 NA non-coding downstream 18535 79374980 ~ 79375277 (+)
G549983 NA non-coding downstream 34945 79391390 ~ 79401647 (+)
G549992 NA non-coding downstream 56179 79412624 ~ 79412942 (+)
G549997 NA non-coding downstream 57837 79414282 ~ 79414492 (+)
G550000 NA non-coding downstream 59354 79415799 ~ 79416011 (+)
G549345 NA other upstream 582492 78772112 ~ 78772557 (+)
G549342 NA other upstream 585142 78769256 ~ 78769907 (+)
G548703 NA other upstream 858579 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1489181 77848962 ~ 77866316 (+)
G550054 NA other downstream 123036 79479481 ~ 79480078 (+)
G550265 NA other downstream 712303 80068748 ~ 80069285 (+)
G550305 NA other downstream 843725 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 1059002 80415414 ~ 80430972 (+)

Expression


Co-expression Network