G549974


Basic Information

Item Value
gene id G549974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79374980 ~ 79375277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622675
ctgttccagacttaTAGAGATTTATATTAGCTGACTCAAGAGTCCTCATTGTCAagtatcctgagtttccacccctcgttaaaaccccctctcttaacaaaggggtagtgtgctaatatagcactgtgtcatgccaggggatggtttgtggggaagatgaggttgctgatgttcccatttttgcAATAGTCAGCAGAAAGTGTCtgttgattttccataaggagcttcattttgtgatcttttcttgccttatcattctttacatacacagggtactgtattttaattacctctgaac

Function

NR:

description
PREDICTED: uncharacterized protein LOC107670751 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622675 True 298 lncRNA 0.41 1 79374980 79375277

Neighbor

gene id symbol gene type direction distance location
LOC110526645 unc13c coding upstream 20021 79089592 ~ 79354959 (+)
LOC110506124 LOC101474724 coding upstream 465643 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 698822 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 862996 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 897022 78389458 ~ 78477958 (+)
LOC110506775 LOC106562487 coding downstream 149532 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 167802 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 196561 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 203245 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 296752 79672029 ~ 79699222 (+)
G549779 NA non-coding upstream 18535 79355049 ~ 79356445 (+)
G549841 NA non-coding upstream 28896 79345671 ~ 79346084 (+)
G549840 NA non-coding upstream 29969 79337127 ~ 79345011 (+)
G549837 NA non-coding upstream 50022 79322931 ~ 79324958 (+)
G549817 NA non-coding upstream 57606 79257873 ~ 79317374 (+)
G549983 NA non-coding downstream 16113 79391390 ~ 79401647 (+)
G549992 NA non-coding downstream 37347 79412624 ~ 79412942 (+)
G549997 NA non-coding downstream 39005 79414282 ~ 79414492 (+)
G550000 NA non-coding downstream 40522 79415799 ~ 79416011 (+)
G550005 NA non-coding downstream 44778 79420055 ~ 79430808 (+)
G549345 NA other upstream 602423 78772112 ~ 78772557 (+)
G549342 NA other upstream 605073 78769256 ~ 78769907 (+)
G548703 NA other upstream 878510 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1509112 77848962 ~ 77866316 (+)
G550054 NA other downstream 104204 79479481 ~ 79480078 (+)
G550265 NA other downstream 693471 80068748 ~ 80069285 (+)
G550305 NA other downstream 824893 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 1040170 80415414 ~ 80430972 (+)

Expression


Co-expression Network