G550079


Basic Information

Item Value
gene id G550079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79674465 ~ 79679581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622803
tgagcacgcactcctgaggggcccctgtgttgaggataagcgtggcggatgtgttgttccctacccttaccacctgggggcgacccgtcaggaagtccaggatccagttgcagagggaggtgtttagtcccagggtccttagcttagtggtgagctttgagggcactatggtgttgaactctagtcaatgaatagtattctcacataggtgttccttttatccaggtgggaaagggcagtgttgagtgcaatagagattgtatcatctgtggatctgttggggcggtatgcaaattggagtaggtctagggtttctgggatagtggtgttgatgtgggccaagaccagcctttcaaagcacttcatggcgacagacaggtcggtagtcatttacaGACGGgttgggtcggtagtcatttaggcaggttactttggtgttcttgggcacagggactatggtggtctgcttgaaatattggtattacagactcagtcaggttgaaaatgtcagtgaagacactttccagttggccaatactgtcatcaaggcaacgggtggctactgtcatcaaggcaacgggtggctactttgaagaatctcaaatataaaatatattttgatttaacacttttggttactacatgatttcatatgttatttcatagttttaatgtcttcactagtactgatcttctacaatgtagaaaatagtaaaaataaataaaaccccttgaatgagtaggtgtgtccaaacttttgactggtactgtaagtagtcagacccttcactcagtactttgttgaagcacctttggcagcgatttcagcctcgagtcttcttgtgtatgacgctacaagcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctgtcagtttggatgggaagcattgctgcacagctattttcaggtctctccagcgatgttcgatcaggttttatgtccaggctctggctgggtcactcaagtacattcagagacttgtcccgaagccactcctgcgttgttatggctgtgtgcttagggtcgttgtcctgttggaagatgaatcttcgccccagtctgaggtcctgagagttctggagcaggtttttatcaaggatctctctgtactttgctccgttcatctttgccccaatcctgactagtctcccagtccctgccactgaaaaacatccccacaccatgattctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgacgttggcattcaggccaaagagttcaatcttggtttcttcgggccagagaatcttgtttatcatggtctgagagtcatttaggtggcttttggcaaactccaagtgggctgtcatgtgccttttactgaggagtggcttccatctggccactccacactaaagccctgattggtggagtgctacagagctggttgtccttctggaaggttctcccatctccacagagcaactCGGAGTTCAGTCagtgtgaccattgggttcttggtcacctccctgaccaaggcctttctcccccgattactcagtttggctgggcggacagctctaggaagagtcttggtggttccaaacttttcttcatttaagaatgatagaggccactgtgttcttggggaccttcaatgctgcagaaacgtTTTGTACCCCTCCCCAGACCTGtacctcgatacaatcctgtctctgagctctacggacaattattttgacctcatggcttggttattgctctgacatacactgtcaactgtgggaccttataaagacaggtgtgtgcctttcgaagtcatgtccaatcaatcaattgaatttaccacaggtggacaccaatcaagttgtagacacatttcaaggatgatcaatggaaacagtacctgagctcaattttgagtctcgtagaaaagggtctgaataaataaggtattttttttcactttgtcattatggggtatggtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctgtttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctactttgtgtagactgcagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctgtttctactgtgtgtagactccagtgttctatttctactgtgtgtaatgtagtgttctgtttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtagactccagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctgtttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctgctgtgtgtagactgcagtgttctatttctactgtgtgtaatgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctgctgtgtgtagactgcagtgttctatttctactgtgtgtaatgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagacagcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctactatgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtatgtagactgcagtgttctatttctactgtgtgtaatgtagtgttctgtttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgcagtgttctatttctactgtgtgtagactccagtgttctatttctactgtgtgtagactgcagtgttctatttatactgtgtgtagacagcagtgttctatttctactgtgtgtagactgcagtgttctatttctactttgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgtagtgttctatttctactgtgtgtaatatagtgttctgtttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatatagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgcagtgttctatttctactgtgtgtagactccagtgttctatttctactgtgtgtagactgcagtgttctatttatactgtgtgtagacagcagtgttctatttctactgtgtgtagactgcagtgttctatttctactgtgtgtaatgcatATCTCCACCCTAATGTATATGTTACAGCCAACTATGTATTTATACAGTATTTGTCTGTATCAGATTGTGGTTATGTATCTGTTCTATTTCTGCAGTGCCTAATGAACTGCAATATACACCGTGTAGAAACAGATAAATAATGACCTGCAATATAGACACTGCAGAAATAGAACAGATAGATATTGCAAGTCAttctatacagttgaagtgggaagtttacatacaccttagccaaatacatttaaactcagtttcacaactcctgacatttaatcctagtaaaaattcctgttttaggtcagtcaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaattatttatttcagcttttatttatttcatcacattcccagtgggtcagacatttacatacactcaattagtatttggtagcattgcctataaattgtttaacttgggtcaaacgttttgtgtagccttccacaagcttcccgcacacgctttttcagttctgcccacaaatgttctataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtcctgaagccattttgccacaactttgaaagtatgcttggggtcattgtccatttggaagacccatttgctaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatattcacataattttccctcctcataatgccatctattttgtgaagtgcaccagtccctcctgcagcaaagcaccccaacaacatgatgctgccacccccgttcttcgcggttgggatggtgttcttctatttttgtttcatca

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622803 True 5087 lncRNA 0.40 2 79674465 79679581
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110511859 myo5a coding upstream 2934 79578522 ~ 79671531 (+)
LOC118936661 LOC106592882 coding upstream 96475 79571838 ~ 79577990 (+)
LOC110506774 LOC106587663 coding upstream 103527 79543079 ~ 79570938 (+)
LOC110506775 LOC106562487 coding upstream 142960 79524809 ~ 79531505 (+)
LOC110526645 unc13c coding upstream 319506 79089592 ~ 79354959 (+)
LOC110526648 LOC106587674 coding downstream 19780 79699361 ~ 79705604 (+)
nrk2 LOC106562430 coding downstream 177855 79857436 ~ 79860739 (+)
LOC110514990 LOC106587684 coding downstream 207933 79887514 ~ 79898351 (+)
LOC110506133 LOC106562504 coding downstream 240382 79919963 ~ 79942131 (+)
LOC118965045 LOC106562464 coding downstream 275218 79954799 ~ 80064775 (+)
G550089 NA non-coding upstream 18270 79655812 ~ 79656195 (+)
G550142 NA non-coding upstream 26311 79647835 ~ 79648154 (+)
G550138 NA non-coding upstream 43838 79630388 ~ 79630627 (+)
G550104 NA non-coding upstream 135466 79538494 ~ 79538999 (+)
G550077 NA non-coding downstream 16831 79696412 ~ 79697525 (+)
G550155 NA non-coding downstream 28337 79707918 ~ 79708128 (+)
G550081 NA non-coding downstream 56050 79735631 ~ 79736467 (+)
G550084 trpm7 non-coding downstream 65414 79744995 ~ 79748571 (+)
G550162 NA non-coding downstream 70708 79750289 ~ 79751523 (+)
G550054 NA other upstream 194387 79479481 ~ 79480078 (+)
G549345 NA other upstream 901908 78772112 ~ 78772557 (+)
G549342 NA other upstream 904558 78769256 ~ 78769907 (+)
G550265 NA other downstream 389167 80068748 ~ 80069285 (+)
G550305 NA other downstream 520589 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 735866 80415414 ~ 80430972 (+)
G551043 NA other downstream 1241126 80920707 ~ 80921436 (+)
LOC110526107 scg3 other downstream 1773915 81435094 ~ 81466198 (+)

Expression

G550079 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

G550079 Expression in each Bioproject

Bar chart with 21 bars.
G550079 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network