G550084 (trpm7)


Basic Information

Item Value
gene id G550084
gene name trpm7
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79744995 ~ 79748571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU622808
caattccatttaaTTGGGGATATGTTAAACTAAATATgtcacaagacctagaattgccttatgtgtatcccacaaaaaggttcactgttataagctaactttttttgatgaatttaagcaaaatacccgggcttaacttcccatggaaaatttccgaAATAATTCTGGAAATTTACTGGAaagtttcagaccctttgcaaccctactgaAGGATCAGGGGTTAAAGGTTAAGGGTTGAATGTCAGTATTACCTTGTAGGTCCAGCACTAACAGCTCTCCCCGGGTGTACTCATATGTCCAGTGGCTGAAGGCCAGCATGGTCTCCTCCAGAAGGTTGGTTGGGACAATCTCGTCCCCGTTGTTATTGTTAAACTTCCTGAACTCTCCAGTAATACACTCCTCTATAGCGAACCATTGGCCTGCTGAGTGACAGTACAACAGAAACACCTCCAGaaacctacagagagagaggtaggcacTGTGTCTTCTGAAATTCTTGTTTCAAATGTCAAAAgacatacatttttaaatggaTAGCAGCTGAAAACAAGCAGCTAAATGAGAAGTGTGGCTCTGGTGTGTTAGTTTACCTGGGAGAGTAAGGGATTGTCTTGGGCCTCATTTGGTTGAAGGCAAATGTCAGTTTCTGAGCAGCTCTCTGCTGTTGAATTTCCTGTCAAGAGAGATGATACCAGTGTATGAGGTATTTCCACATTGAATAACCTTGAATAAACCAGAGGAAGGAAGGATAGAGAAGGAAGGATGAATAGAATGGAGGAAGAGGGTGGTGGAAATTATCATATATTAAAGAGGAAAACTAAACATAGTTGTCCTGCTATGGTGTGTGATTATGAAGAGTGTGTGTACACAGAGGTGAAGCCAATGACGTACagtttatacagtgcattcagaaaggattcagaccccttgacttcttccacattgtttcgttacagccttattctaaaatggattcaattgttcccctccccccctcatcaaatctacacacaatattccattatgacaaagcaaaaaaaaaaagtgtctttagaagtgtttgcaaatgtattaaaattctaaactgaaatataacatttacatatataacatttacataagtattcagacactttgaagcacctttggcagcaattagagcctcgggtcttcttgggtatgacactacaatcttggcacacctgtatttggggagtttctcccattcttctcggcagatcctctcaagctctgtcaggttggatagggagcgtcactgcacagatattttcaggtctctccagagatgttcgatcaggttcaagtccgggctctggctgggccactcaaggacattcagagacttgtcccaaagtcactcctgcgtcgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttcgccacagactttgttcctgagcgctctggagcaggttttcatcaaggatctctttgcactttgttccattcatctttccctcgatcctgactagtctcccagtccctgccgcagaaaaacatccccacagcatgatgctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgacgcttggcattcaggccaaagagatcaatcttggtttcatcagaccagatcattttgtttctcatggtcagagtccttaaggtgccttttggcaaactccaagcgggctgtcatgtgcctcttactgaggagtggcttccgtctggccactctaccataaagacctgattggtggagcgctgcagagatgtttgtccttatggaaggttctcccatctccacagaggaactctagagctctgtcagagtgaccatcaggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggccactgtgttcttggggaccttcaatgctgcagaaatgttttggtacccttccacagatctgtgcctcgacacaatcctgtctcggagctctactgacaattccttcgacctcatgacttggtttttgttctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaattaattaactttatcacaggtggacgccaataaagttgtagaagcatcaaggatgatcaatggaaacaggatgtacctgagctcaatttcgagcctcatagcaaagggtctgaatacttatgtaaataaggtgtctgttttacatttttaatacatttcgcaaaaaattctaaaaaactgttttcgatatgtcattatggggtattgtgtagagattgatgaggaaaaataataattgaatccatttgaaaataaagttgtagaaaaagtcaaggggtctgaatactttcgaatgcactgtaaaccCTGGAAAGTTGACAATATGTCTTGGCCAATAAGAGCCTTTGAAGCTACCAGGACGCCATATTCATACTCCTCCTTTCAGGGCTTTAAGTAATGGGAATGAATCAGGGAACAAACACACGGAGTGTACTAAACATggctatttccatgacatagactgaccaggtgaaagctatgatctgtTATTGATGTAaccttttaaatccacttcaatcagtgtagacgaaggggaggagacatgttaaaacaggatttttaagccttgagacatggactgtgtatgtgtgccattcagagggtgaatgggcaagacaaaagatttaagtggggggagactcaatattaggaaggtgttcttaatgttttgtaccctgagtgtaaaatatatatatacactgtatatacacagtcgtggccaaaagttgagaatgacacaaatgttaatttttaaagtctgctgcctcagtttgtataatggcaatttgcattttctccagaatgttatgaagagcgatcagatgaattgcaaataattgcaaagtcccactttgtcatgcaaatgaactgaatcccccaaaaacatttccactgcatttcagctctgccacaaaaggaccagttgacatgtcagtgattctctcgttaacacaggtgtgagtgttgatgaagacaaggctggagatcactctgtcatgctgattgagttcgaataacagactggaagcttcaaaaggagggtggtgcttggaatcattgttcttcctctgtcaatcatggttacctgcaaggaaacacgtgccgtcatcattgctttgcacaaaaagggcttcacaggcaaggctattgctgccagtaagattgcacctaaatcaaccatttatcggatcatcaacaaacaaacaaatattcagctgcgggatcagggcaccaccagtacagagcttgctcaggaatggcagcaggcaggtgtgagtacaTCTGCACActcagtgaggtgaagacttttggaggatggcctggtgtcaagaagggcagcaaagaagccatccggaaaaaagcttgtccgaagaagacaaggtgagcgctaccatcagtcctgtgtcatgccaacagtaaa

Function

symbol description
trpm7 Predicted to enable calcium channel activity. Acts upstream of or within several processes, including exocrine pancreas development; magnesium ion homeostasis; and melanocyte differentiation. Is integral component of plasma membrane. Is expressed in several structures, including digestive system; immature eye; integument; nervous system; and renal system. Used to study sinoatrial node disease. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1. Orthologous to human TRPM7 (transient receptor potential cation channel subfamily M member 7).

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU622808 True 3555 lncRNA 0.43 2 79744995 79748571
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526648 LOC106587674 coding upstream 39391 79699361 ~ 79705604 (+)
LOC110526647 LOC106562494 coding upstream 45773 79672029 ~ 79699222 (+)
LOC110511859 myo5a coding upstream 73464 79578522 ~ 79671531 (+)
LOC118936661 LOC106592882 coding upstream 167005 79571838 ~ 79577990 (+)
LOC110506774 LOC106587663 coding upstream 174057 79543079 ~ 79570938 (+)
nrk2 LOC106562430 coding downstream 108865 79857436 ~ 79860739 (+)
LOC110514990 LOC106587684 coding downstream 138943 79887514 ~ 79898351 (+)
LOC110506133 LOC106562504 coding downstream 171392 79919963 ~ 79942131 (+)
LOC118965045 LOC106562464 coding downstream 206228 79954799 ~ 80064775 (+)
LOC110506137 LOC106587708 coding downstream 344902 80093473 ~ 80106535 (+)
G550081 NA non-coding upstream 8528 79735631 ~ 79736467 (+)
G550155 NA non-coding upstream 36867 79707918 ~ 79708128 (+)
G550077 NA non-coding upstream 47470 79696412 ~ 79697525 (+)
G550079 NA non-coding upstream 65414 79674465 ~ 79679581 (+)
G550162 NA non-coding downstream 1718 79750289 ~ 79751523 (+)
G550164 LOC100846954 non-coding downstream 13532 79762103 ~ 79762676 (+)
G550166 NA non-coding downstream 19442 79768013 ~ 79773672 (+)
G550167 NA non-coding downstream 29709 79778280 ~ 79778537 (+)
G550171 NA non-coding downstream 43266 79791837 ~ 79792072 (+)
G550054 NA other upstream 264917 79479481 ~ 79480078 (+)
LOC110526645 unc13c other upstream 581964 79089592 ~ 79354959 (+)
G549345 NA other upstream 972438 78772112 ~ 78772557 (+)
G549342 NA other upstream 975088 78769256 ~ 78769907 (+)
G550265 NA other downstream 320177 80068748 ~ 80069285 (+)
G550305 NA other downstream 451599 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 666876 80415414 ~ 80430972 (+)
G551043 NA other downstream 1172136 80920707 ~ 80921436 (+)
LOC110526107 scg3 other downstream 1704925 81435094 ~ 81466198 (+)

Expression

G550084(trpm7) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G550084(trpm7) Expression in each Bioproject

Bar chart with 21 bars.
G550084(trpm7) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network