G550286


Basic Information

Item Value
gene id G550286
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80087838 ~ 80088156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU623043
cccctttacactacaaacacacttcacctgaccaacacacacccctttacactacaaacactcttcacctgaccaacacacacccctttacactacaaacactcttcacctgaccaacacacacccctttacactacaaacacactccacctgaccaacacacacccctttacactacaaacatacACTTCACAagcacatgcatgtacacacccCTCTAcccagcacacacatacacactaaacccccacatacacaccctcactaacacatacagtacacccacacccacaccccacCCCCAAACCTCAACCACCTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU623043 True 319 lncRNA 0.49 1 80087838 80088156

Neighbor

gene id symbol gene type direction distance location
LOC118965045 LOC106562464 coding upstream 23063 79954799 ~ 80064775 (+)
LOC110506133 LOC106562504 coding upstream 145707 79919963 ~ 79942131 (+)
LOC110514990 LOC106587684 coding upstream 189487 79887514 ~ 79898351 (+)
nrk2 LOC106562430 coding upstream 227099 79857436 ~ 79860739 (+)
LOC110526648 LOC106587674 coding upstream 382234 79699361 ~ 79705604 (+)
LOC110506137 LOC106587708 coding downstream 5317 80093473 ~ 80106535 (+)
LOC110506794 LOC106596910 coding downstream 20399 80108555 ~ 80147068 (+)
LOC110526764 fbn1 coding downstream 78027 80166183 ~ 80317535 (+)
LOC110506798 NA coding downstream 236841 80324997 ~ 80326381 (+)
myef2 myef2 coding downstream 327258 80415414 ~ 80430972 (+)
G550284 NA non-coding upstream 3126 80084435 ~ 80084712 (+)
G550223 NA non-coding upstream 139250 79947761 ~ 79948588 (+)
G550222 NA non-coding upstream 142798 79944720 ~ 79945040 (+)
G550212 NA non-coding upstream 205146 79881854 ~ 79882692 (+)
G550195 NA non-coding upstream 236473 79851166 ~ 79851365 (+)
G550288 NA non-coding downstream 2003 80090159 ~ 80090435 (+)
G550276 NA non-coding downstream 40768 80128924 ~ 80129152 (+)
G550296 NA non-coding downstream 49974 80138130 ~ 80139660 (+)
G550265 NA other upstream 18553 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 509848 79571838 ~ 79577990 (+)
G550054 NA other upstream 607760 79479481 ~ 79480078 (+)
LOC110526645 unc13c other upstream 924807 79089592 ~ 79354959 (+)
G549345 NA other upstream 1315281 78772112 ~ 78772557 (+)
G550305 NA other downstream 112014 80200170 ~ 80200529 (+)
G551043 NA other downstream 832551 80920707 ~ 80921436 (+)
LOC110526107 scg3 other downstream 1365340 81435094 ~ 81466198 (+)
LOC110506150 LOC106562517 other downstream 1756761 81815343 ~ 81860498 (+)

Expression


Co-expression Network