G550754


Basic Information

Item Value
gene id G550754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80586414 ~ 80586771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU623644
taaaaaaaagccgattaatcggtatcggcttttttggtcctccaataatcggtatcggtgttggcgttgaaaaatcataatcggtcgacctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagtgttcatgtgatgttgtctgtagtgttcatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagcGGTGACTGAGAGGAGAATGACCTCCAGATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU623644 True 335 lncRNA 0.41 2 80586414 80586771

Neighbor

gene id symbol gene type direction distance location
LOC110516752 NA coding upstream 106582 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 155442 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 260033 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 268879 80166183 ~ 80317535 (+)
LOC110506794 LOC106596910 coding upstream 439346 80108555 ~ 80147068 (+)
LOC110506811 LOC106562533 coding downstream 553452 81140223 ~ 81154890 (+)
LOC110506818 NA coding downstream 682273 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 715992 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 848323 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 938036 81524807 ~ 81547341 (+)
G550734 NA non-coding upstream 59701 80518505 ~ 80526713 (+)
G550729 NA non-coding upstream 88695 80497057 ~ 80497719 (+)
G550726 NA non-coding upstream 99828 80483965 ~ 80486586 (+)
G550712 NA non-coding upstream 136860 80438492 ~ 80449554 (+)
G550715 NA non-coding upstream 143012 80442617 ~ 80443402 (+)
G550758 NA non-coding downstream 1612 80588383 ~ 80591331 (+)
G550868 NA non-coding downstream 63363 80650134 ~ 80650493 (+)
G550878 NA non-coding downstream 88227 80674998 ~ 80683447 (+)
G550883 NA non-coding downstream 101742 80688513 ~ 80688808 (+)
G550902 NA non-coding downstream 107877 80694648 ~ 80695197 (+)
G550305 NA other upstream 385885 80200170 ~ 80200529 (+)
G550265 NA other upstream 517129 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1008424 79571838 ~ 79577990 (+)
G550054 NA other upstream 1106336 79479481 ~ 79480078 (+)
G551043 NA other downstream 333936 80920707 ~ 80921436 (+)
LOC110506150 LOC106562517 other downstream 1258146 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 1435280 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 1543063 82128769 ~ 82198551 (+)

Expression


Co-expression Network