G550758


Basic Information

Item Value
gene id G550758
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80588383 ~ 80591331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU623651
TATTTTATTTCAACTATACATGCCGTGTTAAAAAAATTATAACAAGAAGTCCTGAAACAAAAGACGATCATTTTGTACACATTCACAGTTCCAACTTTACAACATATATACAAACACTCTGAACAAACATCAGGAGGGCTTACTGTCCAATCAGAACAGTATTAGAAAGGTAATGTCAACGAGGCTGGTTCATCTGCACACACAGAGCATAGATAGACAGGAGGGTAGGAAGGCTTTAGACTGACACTGCAACACAAAAACCCAGGTCAATATGGCAACGCACAAGACAACgcagcctgtctgtctggacGAATGgaacaggggtgtgtgtgtgtgtgtgtgtgtgagcccaaACGCTGGTTAGCAGAGGACGACTGATAGACAACAGACTTTAATTAATACCATTATCTTTTTTAAACTAAATGTGGCTTCGGGTTCCAAACAGGCAGACAAATTAATTCCCCAAATAAGGTAAATGTACCCAAATCATGAACCTCATTGTCAATGTGAGATCTGACCCACATCCTGTTGTTATACATGTCCCGGTCACATGACCACTGCTCACTCTAATGGAACAGTTTATTAAGCCATTAGATACACATCTTTGATCTATAATAATTACCCAGAGTGTTTACCTTAATACTGGGTTGGATGGTTTATTGAGTACTGTATTGTGACTGTTTACTGTATATTGGCTGTATAGTGCCATGTTGAGCTGAGTGTTTTGAAGCAAAGCGTTTAGAGAAAAGACAAGAGTCAGTCTACATCCCCATGCCATAATAGTACATTCACTGCATGGAACCTCAGCTTGGTCTATCAGCAGCCTTCTTCTTCATGAGGTCATATACGGATACTGTAATCCCAGCATGCTTTGCTTCAGCCTGCATTCTGTAATGGAATGTTGGTGACTAAACCGACTCTTAGTTCTAGAATCAAAATAACTTGAAATGCAGAACACAAATTTCACTCTGAATTCAAATAATCAGAGTTGCTTAGGTTATATTGTAACAATAATGAAATTCAGGACCAAATCACTTTTTTCCCTCAATTTTTCTGTATATCGATCATTCGTTGAATAAGGCACACAATGCACAGATTGGGGTTAACTGGCCTAAAAATATGTATACTCATATATTTATAATATGTACAGTATCTTGTCATTACCAGCATGACTCGGTAGGACACATTGGTAGATGTTGGTGTGATTGTACACTTGTCACTCACTGGGAAACTGCAAACACAACAATGCCTCTGGAACCAAAATGGCAACCAGAGAACCGAAGATCTAAGATCAGTTACCCTGGAAATGGTTAAGATTAGGTTTGAgagagggtaagctgatcctGCATCTGTACCTTCGGGCGACTACCacacagagagctgtgtgtgAACTCCCAACGGAGCACAGAGACTAACACTAGTGATGGACATGCAGTTGGCAGGTGAGTCAGACAGACATGTTACAGGATGCCATTTCAACCTGACAGAACTAAACCCATTGGTGTTGCCTAAAATGTTTACGTCTTTCATTTgtgaataaaataaagaaaaccaaACCAAAACAACACCAGCCTGTTGAAGTGGGTTGGATGAAATGTTTCTAAATACCACTCTGCTACAGTGAAAGACTGGAGCAAAGGTCTCTGCATCGCCagtttgtatctgtgtgtctgtgtgagacagGAGAAGAGTGGTATGTGTTGATGTCACTGGAGCCTGTTCTAACAGTGCATTGAATTGCATGGTCtgtacgcacacatacacacacacgtcaggAGACAACGGCAGCTGTAGGGTACAGACGCATAAGAGGACTAAATACACTCAACATACATTACTCATCATAAACCAATAGCAGCAAACGTGTTTAGTAGATATCCCAGTGAGTTACAGAGGGTCCCTGTTAGGGTACGTAGGCAGCCAGGCCTTTCACCTCCCcaagcaaagtgtgtgtgtgtgtgtttgctgtacATTGGGTTTTGCCCTCCAGCTGACACACACTGGTGTTCTCTCTGTTGCCTTCCTTCCTCCTCAGTCTTTATAGTTGAGTTAAACACCTCTAAAGGGACACTAAAGGGACACTATGTTTAGTGTGTCTCCTCGCTGCTCTCCCCCATCAGTCAGACAGATAAGATACAAACAGTTCTATTGTATTCCTCCCCCTTGTTCAGTTCAGTCCAGTTCACATTCATGGGAAGACAGAGGgtgtcccccaaatggcacaaaCAGACAGTGCTTAGTGACAGTGAGACATCAGACCCATTCTTCAAGTAGTTCTCGGAGTTAGACCTCGTACCGTCCACAGTCGGGATCATAGGGTTAGGCTACACACTGGGGGCCACGCTAGTCCCCTACAGGACCCCTGCACCCATCTACCCCCACCCTGCCTTCTGTCCTGGGCCTGGGCTGAGGTTAGTGAGTCAGGGccaggggtcagggttagaggagaCTGACCAGTGTGTtgtgagatggagagaaacatggagccACAAGACAAGACACAGACCTCCACGTCACATCTGGTGTGATTTTCTCTTTTTAGAGTGAAGGAATGAATCATTCCACGGGGAACACACCCCGACACACACATGGTCCTACTCTCTCCCTAAGCCTTCTCACAACCAGTCTGGCTCTAGAGCACACTCAGTAGTGCCCCTGCCCCGTCCCAGTTAGTACACTTGGTAGTACACTCCATAGTGTCTATAGTGTCCTAGTAGCTGTACTTGTTGACCACCCTCATCTGAGGAGTCTGTGGGGTGAAGGCGTTGGGTTTAGGGGGGACGTCAGGCTTTAGGGACGGGGTCCGTTTAAGCCCCTGGCGGGGGAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU623651 True 2828 lncRNA 0.45 3 80588383 80591331

Neighbor

gene id symbol gene type direction distance location
LOC110516752 NA coding upstream 108551 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 157411 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 262002 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 270848 80166183 ~ 80317535 (+)
LOC110506794 LOC106596910 coding upstream 441315 80108555 ~ 80147068 (+)
LOC110506811 LOC106562533 coding downstream 548892 81140223 ~ 81154890 (+)
LOC110506818 NA coding downstream 677713 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 711432 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 843763 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 933476 81524807 ~ 81547341 (+)
G550754 NA non-coding upstream 1612 80586414 ~ 80586771 (+)
G550734 NA non-coding upstream 61670 80518505 ~ 80526713 (+)
G550729 NA non-coding upstream 90664 80497057 ~ 80497719 (+)
G550726 NA non-coding upstream 101797 80483965 ~ 80486586 (+)
G550712 NA non-coding upstream 138829 80438492 ~ 80449554 (+)
G550868 NA non-coding downstream 58803 80650134 ~ 80650493 (+)
G550878 NA non-coding downstream 83667 80674998 ~ 80683447 (+)
G550883 NA non-coding downstream 97182 80688513 ~ 80688808 (+)
G550902 NA non-coding downstream 103317 80694648 ~ 80695197 (+)
G550910 NA non-coding downstream 118021 80709352 ~ 80709591 (+)
G550305 NA other upstream 387854 80200170 ~ 80200529 (+)
G550265 NA other upstream 519098 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1010393 79571838 ~ 79577990 (+)
G550054 NA other upstream 1108305 79479481 ~ 79480078 (+)
G551043 NA other downstream 329376 80920707 ~ 80921436 (+)
LOC110506150 LOC106562517 other downstream 1253586 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 1430720 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 1538503 82128769 ~ 82198551 (+)

Expression


Co-expression Network