G550941


Basic Information

Item Value
gene id G550941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80745784 ~ 80746004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU623862
CCTGCCTTAAAAGCCCTTCAGGAATCCCTGCCTTCTAGACTTCTGCCTTAAAAGCCCTTCAGGAATCGCTGCCTTCTAGACTCCTGCCTTAAAAGCCCTTCAGTATTCCCTGCCTTCCAGACTCCTGACTTAAAATCCTTTCAGTACTCCCTGCCTTCTAGACTCCTGCCTTAAAAGCCTTTCAGTACTCCCTGCCTTCCAGACTCCTGCCTTAAGATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU623862 True 221 lncRNA 0.49 1 80745784 80746004

Neighbor

gene id symbol gene type direction distance location
LOC110516752 NA coding upstream 265952 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 314812 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 419403 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 428249 80166183 ~ 80317535 (+)
LOC110506794 LOC106596910 coding upstream 598716 80108555 ~ 80147068 (+)
LOC110506811 LOC106562533 coding downstream 394219 81140223 ~ 81154890 (+)
LOC110506818 NA coding downstream 523040 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 556759 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 689090 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 778803 81524807 ~ 81547341 (+)
G550939 NA non-coding upstream 6711 80738851 ~ 80739073 (+)
G550925 NA non-coding upstream 18451 80727132 ~ 80727333 (+)
G550910 NA non-coding upstream 36193 80709352 ~ 80709591 (+)
G550902 NA non-coding upstream 50587 80694648 ~ 80695197 (+)
G550883 NA non-coding upstream 56976 80688513 ~ 80688808 (+)
G550978 NA non-coding downstream 59084 80805088 ~ 80805309 (+)
G550981 NA non-coding downstream 63904 80809908 ~ 80810245 (+)
G550982 NA non-coding downstream 65624 80811628 ~ 80811930 (+)
G550988 NA non-coding downstream 68289 80814293 ~ 80814507 (+)
G550990 NA non-coding downstream 70044 80816048 ~ 80816737 (+)
G550305 NA other upstream 545255 80200170 ~ 80200529 (+)
G550265 NA other upstream 676499 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1167794 79571838 ~ 79577990 (+)
G550054 NA other upstream 1265706 79479481 ~ 79480078 (+)
G551043 NA other downstream 174703 80920707 ~ 80921436 (+)
LOC110506150 LOC106562517 other downstream 1098913 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 1276047 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 1383830 82128769 ~ 82198551 (+)

Expression


Co-expression Network