G550990


Basic Information

Item Value
gene id G550990
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80816048 ~ 80816737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU623925
GTAGAGACCCAACATTATACACTGGTAGAGTAGAGAGCCAGTAAAGAAACCAACAATATAAACTGGTAGAGTATAGAGTCAGTAGAGACCCAACAATATAAACTGGtagagtatagagacagtagagacccaACAATATAAACTGGTAGAGTATAGAGTCAGTAGAGACCCAACAATATAAACTGGtagagtatagagacagtagagacccaACAATATAaactggtagagaggagagaCAGTAGAGACCCAACAATATAAACTGGTAGAGTATAGAGCCAGTAGAGAACCAACAATATAAACTGGtagagtatagagacagtagagacccaACAATATAAACTGGtagagtatagagacagtagagacccaACAATATAAACTGGTAGAGTACAGAGCCAGTAGAGACCCAACAATATAAACTGGTAGagtacagagacagtagagacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU623925 True 450 lncRNA 0.39 2 80816048 80816737

Neighbor

gene id symbol gene type direction distance location
LOC110516752 NA coding upstream 336216 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 385076 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 489667 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 498513 80166183 ~ 80317535 (+)
LOC110506794 LOC106596910 coding upstream 668980 80108555 ~ 80147068 (+)
LOC110506811 LOC106562533 coding downstream 323486 81140223 ~ 81154890 (+)
LOC110506818 NA coding downstream 452307 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 486026 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 618357 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 708070 81524807 ~ 81547341 (+)
G550988 NA non-coding upstream 1541 80814293 ~ 80814507 (+)
G550982 NA non-coding upstream 4118 80811628 ~ 80811930 (+)
G550981 NA non-coding upstream 5803 80809908 ~ 80810245 (+)
G550978 NA non-coding upstream 10739 80805088 ~ 80805309 (+)
G550941 NA non-coding upstream 70044 80745784 ~ 80746004 (+)
G550992 NA non-coding downstream 912 80817649 ~ 80817854 (+)
G551028 NA non-coding downstream 58333 80875070 ~ 80875276 (+)
G551030 NA non-coding downstream 59251 80875988 ~ 80876654 (+)
G551032 NA non-coding downstream 77840 80894577 ~ 80894778 (+)
G551042 NA non-coding downstream 102995 80919732 ~ 80920023 (+)
G550305 NA other upstream 615519 80200170 ~ 80200529 (+)
G550265 NA other upstream 746763 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1238058 79571838 ~ 79577990 (+)
G550054 NA other upstream 1335970 79479481 ~ 79480078 (+)
G551043 NA other downstream 103970 80920707 ~ 80921436 (+)
LOC110506150 LOC106562517 other downstream 1028180 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 1205314 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 1313097 82128769 ~ 82198551 (+)

Expression


Co-expression Network