G551228


Basic Information

Item Value
gene id G551228
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81220013 ~ 81220222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624194
CGATACATTTGCTTGACAAACAATTTAACCAGACAATAACATCTAAACCATCCACAAGCTGGTAAGTAaataaatgttgttgttgttgtttacctgtGCGTGTTCTGGTCCGAAGTAGGTGGGTCCGTACTGAGACAGGTTGATGAATCTAGACTTCTTCTCTACTTTCTCTGTAGCGAAGCTCACAAAGTCATCCGTCGTCACCGCCTG

Function

NR:

description
dmX-like protein 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624194 True 210 lncRNA 0.43 1 81220013 81220222

Neighbor

gene id symbol gene type direction distance location
LOC110506811 LOC106562533 coding upstream 67184 81140223 ~ 81154890 (+)
LOC110516752 NA coding upstream 740181 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 789041 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 893632 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 902478 80166183 ~ 80317535 (+)
LOC110506818 NA coding downstream 48822 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 82541 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 214872 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 304585 81524807 ~ 81547341 (+)
LOC110506823 LOC105015051 coding downstream 330964 81551186 ~ 81568248 (+)
G551227 NA non-coding upstream 1855 81217861 ~ 81218158 (+)
G551226 NA non-coding upstream 2839 81216971 ~ 81217174 (+)
G551225 NA non-coding upstream 3383 81216322 ~ 81216630 (+)
G551224 NA non-coding upstream 4092 81215566 ~ 81215921 (+)
G551206 LOC106562546 non-coding upstream 36629 81179908 ~ 81183384 (+)
G551229 LOC106562546 non-coding downstream 313 81220535 ~ 81221021 (+)
G551294 NA non-coding downstream 105568 81325790 ~ 81328151 (+)
G551296 NA non-coding downstream 105912 81326134 ~ 81334349 (+)
G551305 NA non-coding downstream 147603 81367825 ~ 81368163 (+)
G551043 NA other upstream 298577 80920707 ~ 80921436 (+)
G550305 NA other upstream 1019484 80200170 ~ 80200529 (+)
G550265 NA other upstream 1150728 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1642023 79571838 ~ 79577990 (+)
LOC110506150 LOC106562517 other downstream 624695 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 801829 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 909612 82128769 ~ 82198551 (+)
G551805 NA other downstream 1044747 82264969 ~ 82265749 (+)

Expression


Co-expression Network