G551229 (LOC106562546)


Basic Information

Item Value
gene id G551229
gene name LOC106562546
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81220535 ~ 81221021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624196
CTGGAACAGGTCTGTGTACTGatctcctcctgtcttcctcgCCCCCTCTACCTCGGACACCTTGCCTCCCTtcgccccctcctctcctcccttataGGAGGTGTCCAGGTCAGCAGAGAGCAGAgcgtagaggggtagagggggtatGGAGTTGATTTCTGTGTAATCTCGTCCCCCGTCGCGGCCGGCCACGATGGTGTCTTTAGCCGTACTGCCGCTCACACTGATTGTCCGGGACAGGTGGCGTCTGGTTCCACCCTCACCTGCCTCCACGTCCCTCACCACAGCAACCTCCCCAGCGATACATTTCACCAGGTGGGACAGGATGG
>TU624198
CTGGAACAGGTCTGTGTACTGatctcctcctgtcttcctcgCCCCCTCTACCTCGGACACCTTGCCTCCCTtcgccccctcctctcctcccttataGGAGGTGTCCAGGTCAGCAGAGAGCAGAgcgtagaggggtagagggggtatGGAGTTGATTTCTGTGTAATCTCGTCCCCCGTCGCGGCCGGCCACGATGGTGTCTTTAGCCGTACTGCCGCTCACACTGATTGTCCGGGACAGGTGGCGTCTGGTTCCACCCTCACCTGCCTCCACGTCCCTCACCACAGCAACCTCCCCAGCGATACATTTCACCAGGTGGGACAGGATGGCCTGAAGAAGAAGAATAACCATCTTCCTCATCCGTGGCAGAGACATTAATATAGTCATTGACGGCATCCTCgccatcatcattgtcatcaTAATTACAGTAGTCATGTTgttgtcatcatcatcatgacaTTCTATGACTACTCAAGAAGTTGTCTGG
>TU624195
TACTGatctcctcctgtcttcctcgCCCCCTCTACCTCGGACACCTTGCCTCCCTtcgccccctcctctcctcccttataGGAGGTGTCCAGGTCAGCAGAGAGCAGAgcgtagaggggtagagggggtatGGAGTTGATTTCTGTGTAATCTCGTCCCCCGTCGCGGCCGGCCACGATGGTGTCTTTAGCCGTACTGCCGCTCACACTGATTGTCCGGGACAGGTGGCGTCTGGTTCCACCCTCACCTGCCTCCACGTCCCTCACCACAGCAACCTCCCCAGCGATACATTTCACCAGGTGGGACAGGATGG
>TU624197
TACTGatctcctcctgtcttcctcgCCCCCTCTACCTCGGACACCTTGCCTCCCTtcgccccctcctctcctcccttataGGAGGTGTCCAGGTCAGCAGAGAGCAGAgcgtagaggggtagagggggtatGGAGTTGATTTCTGTGTAATCTCGTCCCCCGTCGCGGCCGGCCACGATGGTGTCTTTAGCCGTACTGCCGCTCACACTGATTGTCCGGGACAGGTGGCGTCTGGTTCCACCCTCACCTGCCTCCACGTCCCTCACCACAGCAACCTCCCCAGCGATACATTTCACCAGGTGGGACAGGATGGCCTGAAGAAGAAGAATAACCATCTTCCTCATCCGTGGCAGAGACATTAATATAGTCATTGACGGCATCCTCgccatcatcattgtcatcaTAATTACAGTAGTCATGTTgttgtcatcatcatcatgacaTTCTATGACTACTCAAGAAGTTGTCTGG

Function

NR:

description
dmX-like protein 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624196 False 329 lncRNA 0.60 1 81220535 81220863
TU624198 False 487 lncRNA 0.54 1 81220535 81221021
TU624195 False 313 lncRNA 0.60 1 81220551 81220863
TU624197 True 471 lncRNA 0.54 1 81220551 81221021

Neighbor

gene id symbol gene type direction distance location
LOC110506811 LOC106562533 coding upstream 67706 81140223 ~ 81154890 (+)
LOC110516752 NA coding upstream 740703 80477819 ~ 80479832 (+)
myef2 myef2 coding upstream 789563 80415414 ~ 80430972 (+)
LOC110506798 NA coding upstream 894154 80324997 ~ 80326381 (+)
LOC110526764 fbn1 coding upstream 903000 80166183 ~ 80317535 (+)
LOC110506818 NA coding downstream 48023 81269044 ~ 81284987 (+)
LOC110526110 LOC106562529 coding downstream 81742 81302763 ~ 81350307 (+)
LOC110526107 scg3 coding downstream 214073 81435094 ~ 81466198 (+)
LOC110506821 LOC106562526 coding downstream 303786 81524807 ~ 81547341 (+)
LOC110506823 LOC105015051 coding downstream 330165 81551186 ~ 81568248 (+)
G551228 NA non-coding upstream 313 81220013 ~ 81220222 (+)
G551227 NA non-coding upstream 2377 81217861 ~ 81218158 (+)
G551226 NA non-coding upstream 3361 81216971 ~ 81217174 (+)
G551225 NA non-coding upstream 3905 81216322 ~ 81216630 (+)
G551224 NA non-coding upstream 4614 81215566 ~ 81215921 (+)
G551294 NA non-coding downstream 104769 81325790 ~ 81328151 (+)
G551296 NA non-coding downstream 105113 81326134 ~ 81334349 (+)
G551305 NA non-coding downstream 146804 81367825 ~ 81368163 (+)
G551306 NA non-coding downstream 148385 81369406 ~ 81369698 (+)
G551043 NA other upstream 299099 80920707 ~ 80921436 (+)
G550305 NA other upstream 1020006 80200170 ~ 80200529 (+)
G550265 NA other upstream 1151250 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 1642545 79571838 ~ 79577990 (+)
LOC110506150 LOC106562517 other downstream 623896 81815343 ~ 81860498 (+)
LOC118964938 LOC106562620 other downstream 801030 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 908813 82128769 ~ 82198551 (+)
G551805 NA other downstream 1043948 82264969 ~ 82265749 (+)

Expression


Co-expression Network