G551333


Basic Information

Item Value
gene id G551333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81470881 ~ 81472859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624341
ccatcactccttagccccttccatcttctctccatcactccttagccccttccatcttctctccatcaatccttagccccttccatcttctctccatcactccttagccccttccatcttctctccatcactccttagccccttccatcttctctccatcactctttaGCCCCTCCATCTTTTCTCCATCACTCCTTACCACCTTCTCTCCATCACTCCTTACCACCTTCcatcttctctccatcactccttagccccttccatcttctctccatcactccttagcaccttccatcttctctcccttctttctgcCAAACATACATCCTTTTTTCTTCCTggctttctttcctctccttcttcatAGTCTTCTTTAGTCCTTGCTTCCCTGATACACACTCCCccgccttctcctcctctctctttcctggcAGATCTATAATTAGCTGATAAGAGGCCTCAACCATCTGCAGACTGATCTATGTGACCTAatagggctgcatctcaatagtctacagTAGAGATTGGACCATAAACCCCAAATTACCAACACTGACATTTCTAACTCATACCCAAGCAATTTCCCCCCTAGACTGTTTTCAGATAaatggacagggaggagaggtggagaggaaagagaggtggaggtgaaagagaggtggaggtgaaagagagatagagaggtggaggaaagagaggtggaggtgaaagagaggtggaggtgaaaaagaggtggagaggaaggagtgatggacaggaaggagagatggagatgaaggAGAGGTGGACAGGAAGGAGTGAtggacaggaaggagaggtggagatgaaggagaggtagagatgaaggagaggtggaggtgacAAGGAGAGGAAGCTTCTTTCACCGTAACCATTAGATATTGGTGATTAGGTCAGCCTGCTGCTGTGTCCTGAGCACCATACTGCTCCCAGAGCATTGTTCATCCATTATTCAGACTCCCTCAGGCACCACGGCAACCCACAATCCAATTAgaccagcaggtgtgtgtgtctcagagtgACAGCACAGACTGCCTGTTACCAACTAGAACTGTACTCAGCTGCAGAACATCTAACCCAGTTTCCACTACCAAGTCTCAGATCATGTAAAGCTTGCTTTACTCCATAGCTTCAAAACTATATTAAAACTAGATTTCTCCTTCATCCATAGCTCTGTATGAAAcattttgagagtggttacatttctccagccgcATCCCTCAACTGTTAACCAAAACAAGTGTCAGGGTGACGGCTTGTTGTTTTCTAATCCCAGATTGCCCGTTTAAACCAGTTTCACTTCAAGGAAACCATGACATTTCCTCTAAATCCTGTAACATAGCTGTTAAATCACAGAGCACTGAACCATAATGCTGCCCAGCTGTAGGTTGATCAGGTTATGGTCTCCTTAGAGACCTGGGGCCGTAGGT
>TU624342
gaaagagaggtggagaggaaagagaggtggaggtgaaagagaggtggaggtgaaagagagatagagaggtggaggaaagagaggtggaggtgaaagagaggtggaggtgaaaaagaggtggagaggaaggagtgatggacaggaaggagagatggagatgaaggAGAGGTGGACAGGAAGGAGTGAtggacaggaaggagaggtggagatgaaggagaggtagagatgaaggagaggtggaggtgacAAGGAGAGGAAGCTTCTTTCACCGTAACCATTAGATATTGGTGATTAGGTCAGCCTGCTGCTGTGTCCTGAGCACCATACTGCTCCCAGAGCATTGTTCATCCATTATTCAGACTCCCTCAGGCACCACGGCAACCCACAATCCAATTAgaccagcaggtgtgtgtgtctcagagtgACAGCACAGACTGCCTGTTACCAACTAGAACTGTACTCAGCTGCAGAACATCTAACCCAGTTTCCACTACCAAGTCTCAGATCATGTAAAGCTTGCTTTACTCCATAGCTTCAAAACTATATTAAAACTAGATTTCTCCTTCATCCATAGCTCTGTATGAAAcattttgagagtggttacatttctccagccgcATCCCTCAACTGTTAACCAAAACAAGTGTCAGGGTGACGGCTTGTTGTTTTCTAATCCCAGATTGCCCGTTTAAACCAGTTTCACTTCAAGGAAACCATGACATTTCCTCTAAATCCTGTAACATAGCTGTTAAATCACAGAGCACTGAACCATAATGCTGCCCAGCTGTAGGTTGATCAGGTTATGGTCTCCTTAGAGACCTGGGGCCGTAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624341 False 1448 lncRNA 0.47 4 81470881 81472859
TU624342 True 833 lncRNA 0.47 2 81471959 81472859

Neighbor

gene id symbol gene type direction distance location
LOC110526107 scg3 coding upstream 4683 81435094 ~ 81466198 (+)
LOC110526110 LOC106562529 coding upstream 120574 81302763 ~ 81350307 (+)
LOC110506818 NA coding upstream 185894 81269044 ~ 81284987 (+)
LOC110506811 LOC106562533 coding upstream 318052 81140223 ~ 81154890 (+)
LOC110516752 NA coding upstream 991049 80477819 ~ 80479832 (+)
LOC110506821 LOC106562526 coding downstream 51948 81524807 ~ 81547341 (+)
LOC110506823 LOC105015051 coding downstream 78327 81551186 ~ 81568248 (+)
LOC118964937 NA coding downstream 187037 81659896 ~ 81661991 (+)
LOC110526974 LOC106562522 coding downstream 209025 81681884 ~ 81734963 (+)
LOC110506150 LOC106562517 coding downstream 342484 81815343 ~ 81860498 (+)
G551326 NA non-coding upstream 36704 81429221 ~ 81434177 (+)
G551311 NA non-coding upstream 78860 81391647 ~ 81392021 (+)
G551307 NA non-coding upstream 98936 81371623 ~ 81371945 (+)
G551306 NA non-coding upstream 101183 81369406 ~ 81369698 (+)
G551305 NA non-coding upstream 102718 81367825 ~ 81368163 (+)
G551334 NA non-coding downstream 285 81473144 ~ 81474264 (+)
G551339 NA non-coding downstream 8249 81481108 ~ 81481342 (+)
G551342 NA non-coding downstream 14139 81486998 ~ 81487630 (+)
G551356 NA non-coding downstream 52900 81525759 ~ 81608457 (+)
G551366 NA non-coding downstream 79537 81552396 ~ 81554086 (+)
G551043 NA other upstream 549445 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1039952 80415414 ~ 80430972 (+)
G550305 NA other upstream 1270352 80200170 ~ 80200529 (+)
G550265 NA other upstream 1401596 80068748 ~ 80069285 (+)
LOC118964938 LOC106562620 other downstream 549192 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 656975 82128769 ~ 82198551 (+)
G551805 NA other downstream 792110 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 1004059 82476918 ~ 82483802 (+)

Expression


Co-expression Network