G551370


Basic Information

Item Value
gene id G551370
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81573428 ~ 81576841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624398
CTTTATTTGGCATGTTTTGGAACAAATGTTGAATACAGACATTGGAAGACAAACAGTTCATTTCAGGCACATTTGGGTACATTCTGTCGAGCTCCATAAGACTAgaacctctacacctctactcatGATGTTCTCAGTGTGTGGTTTATTGGGCCTGTTCATGCACAGGGTCAGTCGCTCTCACGCAACCCACTGGACaaagacgtcagttcaacatctagttttgactGTCAACTAACGTGAACTCAAAGTAAAATCAACAAACATGCTAACCTTCTCATTGGATTTAGGATAAAAGTTAGGTGAAAAAAAGACAATTATACCTGAAATCCTTTACATTGAtcactttttgcaaatccaatcagttttccacattgattcaatgtcatcacatagaTCTTTGCTGTTAAAATGACATGGaatcaatgttgattcaaccagttagTGCCTAGTgggaaacagaagaaaacaggagaAGTGTTCAGGTAACTGATCCCGTGCTCCATTTCAGAACATTTTGCTCCTGTTTTGTGCCTACAGTACACAACCCTAAACAGATGGCAGGGTCGGGGGAGTTGCAGGAGTGCTCTACaccagtgtttctcaacctctgGTCCGTGGACCGGCACCTTTCCCAGGGATGTTGCTGACAGGTCCCTCAGGCGGTTAGTTGTCAAGGGGGTCATAGTTAGCCAATCACTGGTAGTAAAAGGTTGCTAAACACTGCTCTACGCCCCTTTGTCAAGTTGCTTCAGCTGCTTTGGAGACAATCATCCCTCAGCAATGCCAGGAGGCATTTATGTCCTTTTGATTCTATACACTAGACCTGGCATTGTGTTATTATCTTCTAAAAGCTCTTAATACTTTCAGCCCTGTAGGGGTACAGTAAAACATAATGGTGTGTgtaactttaaatgacacttctGTCATCGGAAGTTCCAGGTATAGAATTGCTTTAAGCCTGTTCTTTGTGGAACCTCTCCGTCATGTCTTTGATTGGTATATGGTTTATGATTGCAGGTGAAGCTTTTGGCCAGCAAGACATATGACGGTGTGTTGAAGGAGGAGGCACAGCCTCCTGTAAACATAAACAAGGAATGAAGCATCTATATCTTCATCAGATATAACAGCAGGTTATGCATACAATACAAAACTGAAGGACTACAAGCGATTAAAATGGCGATGGATCTGGAGTTTAAATAAATGTGTCCGCTGAGGTTTTTCTGTGAAACAAAACAGACAATGAAGAGAAACATTTGATCTGATAGCTATTGCAGTTGTTAATAAAACTGGTCCCATGGAGTTGCTATGCACTGCACAGCCTTGTGTGAGACGACGAAAGTGTCAAACCGACCAATGACATTCATCCGTTTGGTCCTGTTTAGGCCAACAACATTGTTGACAAACCATGGGGTCGATTCCGATTCAATTCCAATCCCCTCAGGAAATAAATACAGTGAACTTCAATGAATTCAATGAATTAACTGACtgaaatttaaatggaattgaccccaaccctgttgTTTTTTTACTCTATCGTGTCACTACTGAACCTGAGAGAGAAGTTGAGTCCTCTCTCTTTTATTTGAGAAGTTGAGTCCTCTTTCACTCTTATTTTAGGGCAGCCTCAGTAGATTGCCTCTCCAGTGTGGCAGGCAGAGATTCTAGCATTGCTGTGTATTATTCACATCAGGCACTCTGTCTCCCTTCTGCTCTAAACAACTGATGTAGGTTTGAAATACAGACGGACACAGTAGCCTGCTGTGTCGGCTTCGCTAGCTTTCTCTTTATGACTTagagattaaataaataatatctCCCTTATTATCCCCTCCCATAGccatttcctgcagtcaaatgacctagtggcctcatgggtggaatgttattcatatttttcataattaataagcATTTTTTTGAACACATTTTTTCTATGTCagacggttttgttatatttcagttttctgtgatgtatataaagtgtaatattgggattcaAACTcaacatttaatacatttcaactctatatgtgacatggtacaggtgtcttatttcttttaagcccataaccatgtgtgtgaggtgtatacttttgtttcaaagtagatttatgtgaccctgatttagcccactgcagtaaaaggtgaAAGCGATCGTTCACCCCAAAATCAAAACTCGTCAGACATTTTTATTCATTGAAGCGTAAAAGATTTCTCGGTTTGACACAACACCACTTTTGATGTATGAAGACATCTGACAATTATAAATATTGTTTTCCCCTTTAGCATCTAGTATTTTAAAGATAGGTGAGAATTTGGTGACTCATGAATGCTTGTTTGGTGGATACATGCACAAGATCTCATCCCCTTTACCTCATCTTGCTTATCATTGCAACAACCGGACATTGCTAGGCTAACATTGCTAGGCTAACATTGCTATGCTAACATTGCTAGGCTAACAGCGCTCAAAAGTAACTCAATAGACTTTTTCTATCAAATTCACAGTCCTTCGTGGATTATTAGACCTATATGCATCTCCCATAGTGAGTGTATATTACGTAGGCACCTCCAGAATACAAACATACTTCTGACTGTCTAGTATCTCCTCATGGGTGAATTTCACCAAGCCTCTGCTTGGCTCATAGCAACGTGCCAAACCCCCACTAAATACCGGCTGGCCAGATTGGGTGTTTACCTCTGGGTGGTACAGTCTAACACACACTGTCTGGTTTGGCAAAGATCTAGAACAGACTAGAGAGTCTGATTGATGCACCGTCTATGAGTACATGCtccggggtgaagtttcccctaggtacagagtTAAGATCAGCTTCCTCTCCaccaaccctaatcttaaccattaGTGGAGGAAAAgtaaaactgacccaagatcagtgtctagcGGAAACTTCACCCTACACCGTGTCTTCATAATCCAGTCTAGTTGGCGACATGGACAAAGCATTTTAGCAACAACTCACATCTTATCAACGGCATCACAATCCACCAAAACCAAAAATTatattaataataacaataaaactcCAAACAATAAACAACTCTTATATATAATGAACATGTCATTATTTTGGGACAAGAATGACAAAAACATACAATTACATAATGGCTTAATTTATACTGTTTTTGAAATAGTCAGAGAGTGACAAACTGAAAAGACAATGTCACTGCTCTAAGTTGATTTGGTCTTATGTACAAGGTGGGTACTTCAAACATTCAAACCTCTTTAGTAAGTTAGAAAATGGCTTCTGTGTTCTGTAACTGTTCTTATAAAATAATTATCTTCAACAGATCTCCCTTAATCTTCCCTGCTTAGTGACGTTTGCTGCTGGTTGATTCTCCTCGCCTTCTGATTGATCTGCGCT

Function

NR:

description
hyaluronan and proteoglycan link protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624398 True 3386 lncRNA 0.40 2 81573428 81576841

Neighbor

gene id symbol gene type direction distance location
LOC110506823 LOC105015051 coding upstream 5180 81551186 ~ 81568248 (+)
LOC110506821 LOC106562526 coding upstream 26087 81524807 ~ 81547341 (+)
LOC110526107 scg3 coding upstream 107230 81435094 ~ 81466198 (+)
LOC110526110 LOC106562529 coding upstream 223121 81302763 ~ 81350307 (+)
LOC110506818 NA coding upstream 288441 81269044 ~ 81284987 (+)
LOC118964937 NA coding downstream 83055 81659896 ~ 81661991 (+)
LOC110526974 LOC106562522 coding downstream 105043 81681884 ~ 81734963 (+)
LOC110506150 LOC106562517 coding downstream 238502 81815343 ~ 81860498 (+)
trnap-ugg-9 NA coding downstream 292409 81869250 ~ 81869323 (+)
cdkn2aip LOC106587807 coding downstream 306552 81883393 ~ 81888699 (+)
G551366 NA non-coding upstream 19342 81552396 ~ 81554086 (+)
G551342 NA non-coding upstream 85798 81486998 ~ 81487630 (+)
G551339 NA non-coding upstream 92086 81481108 ~ 81481342 (+)
G551334 NA non-coding upstream 99164 81473144 ~ 81474264 (+)
G551333 NA non-coding upstream 100569 81470881 ~ 81472859 (+)
G551394 NA non-coding downstream 34353 81611194 ~ 81611400 (+)
G551405 NA non-coding downstream 67920 81644761 ~ 81645951 (+)
G551407 NA non-coding downstream 72187 81649028 ~ 81649315 (+)
G551373 NA non-coding downstream 78639 81655480 ~ 81656060 (+)
G551372 NA non-coding downstream 80130 81656971 ~ 81657496 (+)
G551043 NA other upstream 651992 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1142499 80415414 ~ 80430972 (+)
G550305 NA other upstream 1372899 80200170 ~ 80200529 (+)
G550265 NA other upstream 1504143 80068748 ~ 80069285 (+)
LOC118964938 LOC106562620 other downstream 445210 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 552993 82128769 ~ 82198551 (+)
G551805 NA other downstream 688128 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 900077 82476918 ~ 82483802 (+)

Expression


Co-expression Network