G551405


Basic Information

Item Value
gene id G551405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81644761 ~ 81645951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624441
GGACCACACAGTTGAGACACTAAAAGCAGTCAGTCAAACATTGCACAGAATGTTCCTTGGAGTcctctaaaatagattaaatcatCTAAACATTATTGCTATCTATACATAAACAAAGTACAGTAAATAAGAGGACATTCAGGAACTTCTAAAAGGTCTGTGATAGAGGATGAGACAGCAAGCTTTGAAAAGACATTCACATTGTTACCTGATCAAATGTAGCATTTCATTATGGCTGGACAGTTGGCAAAAAAGATCCCTAATTTTTCTTGGGAACCATCATCACAAAAAGAACAGTCACGTTTATCTGAAGGAATGTTTGTGTATCGACCAGTCTTAATATCACGAGGGGCCAATTCACATCTACATTAGCAAAAATATTCATTAGATAACTGTACATACATCAGGTTGTCACAAAAGTGCATTTAAAAACAGCAGTGTGCACAATTTGTTACTTTCAAATTACTTTcagtaaaaaatacaaataaaatccaACTATGTTGACCTTAAAGAAAATCTTGGATCATAAATACGTATTAGAACGATCCCATCATCATAAGAGGTGTAATCATACAATAGAACATAATGGTTTTGGTATCAGTGTAATGACAGTACAGTAAATTGTGCACATCTGTATAAACGTCTCCCCGAATAGGGAACACAGAATGTAATGCTGACAATGATCAAGCGTTATAAAGGTTGAAGAAAATCATAAGTACAGTAGTTGTGCAGTAAGGCTGAGGGTTTAAAGTGATAGTTTAGGATTTTAAACAACTTATTGTTAGGCTCCTCACTCTGTCAAGTCTTTGGGCCAGGAGAAACAGTAATGGTTCAGTTCCCTTTAAAACAGCCACTTCAAAACGTCACATAACTTAAGCCACCACTAGCTGACGCCCAATAGAAGTGAATGGGACATTGCATTTAGAAAGCACTTTCAAAAAGATTCCAAAGGCGCTAAGCAGCAATCAACATGCCCCtgagtttgatttgattgattagaAATTTTCATGGCAAGCCCACAGACAGGGCAAAATCACAGTGCCTAGCCAACCTTAGTAATAACAAAGCCATCATTTTCGTTGTTCTGCTGTCcgttgacatgttttttttttttttaaagatacatttcacccctttttctcccctatttcgtggtatccaattgttttagtagctactatcttgtctcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624441 True 1191 lncRNA 0.36 1 81644761 81645951

Neighbor

gene id symbol gene type direction distance location
LOC110506823 LOC105015051 coding upstream 76513 81551186 ~ 81568248 (+)
LOC110506821 LOC106562526 coding upstream 97420 81524807 ~ 81547341 (+)
LOC110526107 scg3 coding upstream 178563 81435094 ~ 81466198 (+)
LOC110526110 LOC106562529 coding upstream 294454 81302763 ~ 81350307 (+)
LOC110506818 NA coding upstream 359774 81269044 ~ 81284987 (+)
LOC118964937 NA coding downstream 13945 81659896 ~ 81661991 (+)
LOC110526974 LOC106562522 coding downstream 35933 81681884 ~ 81734963 (+)
LOC110506150 LOC106562517 coding downstream 169392 81815343 ~ 81860498 (+)
trnap-ugg-9 NA coding downstream 223299 81869250 ~ 81869323 (+)
cdkn2aip LOC106587807 coding downstream 237442 81883393 ~ 81888699 (+)
G551394 NA non-coding upstream 33361 81611194 ~ 81611400 (+)
G551356 NA non-coding upstream 36304 81525759 ~ 81608457 (+)
G551370 NA non-coding upstream 67920 81573428 ~ 81576841 (+)
G551366 NA non-coding upstream 90675 81552396 ~ 81554086 (+)
G551342 NA non-coding upstream 157131 81486998 ~ 81487630 (+)
G551407 NA non-coding downstream 3077 81649028 ~ 81649315 (+)
G551373 NA non-coding downstream 9529 81655480 ~ 81656060 (+)
G551372 NA non-coding downstream 11020 81656971 ~ 81657496 (+)
G551371 NA non-coding downstream 16464 81662415 ~ 81662935 (+)
G551043 NA other upstream 723325 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1213832 80415414 ~ 80430972 (+)
G550305 NA other upstream 1444232 80200170 ~ 80200529 (+)
G550265 NA other upstream 1575476 80068748 ~ 80069285 (+)
LOC118964938 LOC106562620 other downstream 376100 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 483883 82128769 ~ 82198551 (+)
G551805 NA other downstream 619018 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 830967 82476918 ~ 82483802 (+)

Expression


Co-expression Network