G551407


Basic Information

Item Value
gene id G551407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81649028 ~ 81649315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624443
ACAAATCTCTTTAGAATTGTAGAAGCGCAGTCAACATAATAGTGTTGCTTTACATCTTCTTTGGTTACATTCCAAATTACAACAGCAAGGCCGTTGGCGTCATTCTTCAACTGGATCCTGTCCTGATAACGTGGATCCACAGTCAACTCTGACAGCTTCTTGCTATACTCGAACACTTGGCCAATTTTCTCTGTACATACACTGAAGTTTGACACAGGACACTGGTCATCATCAGGTATTTCTATGGATAGAGATTCCCCCACACGACAACAAAGTATATCCaagaaa

Function

NR:

description
uncharacterized protein LOC110506826 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624443 True 288 lncRNA 0.41 1 81649028 81649315

Neighbor

gene id symbol gene type direction distance location
LOC110506823 LOC105015051 coding upstream 80780 81551186 ~ 81568248 (+)
LOC110506821 LOC106562526 coding upstream 101687 81524807 ~ 81547341 (+)
LOC110526107 scg3 coding upstream 182830 81435094 ~ 81466198 (+)
LOC110526110 LOC106562529 coding upstream 298721 81302763 ~ 81350307 (+)
LOC110506818 NA coding upstream 364041 81269044 ~ 81284987 (+)
LOC118964937 NA coding downstream 10581 81659896 ~ 81661991 (+)
LOC110526974 LOC106562522 coding downstream 32569 81681884 ~ 81734963 (+)
LOC110506150 LOC106562517 coding downstream 166028 81815343 ~ 81860498 (+)
trnap-ugg-9 NA coding downstream 219935 81869250 ~ 81869323 (+)
cdkn2aip LOC106587807 coding downstream 234078 81883393 ~ 81888699 (+)
G551405 NA non-coding upstream 3077 81644761 ~ 81645951 (+)
G551394 NA non-coding upstream 37628 81611194 ~ 81611400 (+)
G551356 NA non-coding upstream 40571 81525759 ~ 81608457 (+)
G551370 NA non-coding upstream 72187 81573428 ~ 81576841 (+)
G551366 NA non-coding upstream 94942 81552396 ~ 81554086 (+)
G551373 NA non-coding downstream 6165 81655480 ~ 81656060 (+)
G551372 NA non-coding downstream 7656 81656971 ~ 81657496 (+)
G551371 NA non-coding downstream 13100 81662415 ~ 81662935 (+)
G551410 NA non-coding downstream 16599 81665914 ~ 81666243 (+)
G551043 NA other upstream 727592 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1218099 80415414 ~ 80430972 (+)
G550305 NA other upstream 1448499 80200170 ~ 80200529 (+)
G550265 NA other upstream 1579743 80068748 ~ 80069285 (+)
LOC118964938 LOC106562620 other downstream 372736 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 480519 82128769 ~ 82198551 (+)
G551805 NA other downstream 615654 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 827603 82476918 ~ 82483802 (+)

Expression


Co-expression Network