G551721


Basic Information

Item Value
gene id G551721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82112035 ~ 82114356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624843
gggggccgaatactttcgcaaggcactgtacatacacacgcacacacacacatatgtgtgtgtgtatatatatatgtatatatatgtatatatatgtgtgtgtgtgtatatatattcatTCATGTCACAATGATTCAATCAGAGTGGATGCAACTCCCCCACCACCGTCTTTTGGACTCCAATGGACTGAACCGCAGGCCGACTGTGGTTTTTCCCTGCCTTTGGATATGGATATGCAGAACTCTCACACCACACGGGGATCTCAGAGAGCTGGGACAACCTATACCATTAAAGAGGAAGTTTATTTTTTACTTGTTTATCTACTACTATACATCTATATCCATTAATAATACTCTTTATTACATGTTTTGTACTGACTTGTAATGCTGTGTTGAAGTATTTGTGAGTTATGAACCTTGGGACACCGTAGGGAAGCTACAGCCAGTAGTTTACTGTGGATGGTTTACTTCCTCGAAAGTGTTCTGATTGACTTACATACAGTAGCCAGACCCTCCCATAAACCCACTCGGCGCTACAGCAACGACCCCTAAGATGGTTGAAAGTTTAAAGGTCAAAATGATGTAACGATTGACATCAGCCTGTAACAGTAACACTGCAGACATGGAACACATTTAACATTGCCTTGTGTGACATTTTTGCACAAAGCTTTTCCCATTCTATAGATTTAAATGTATGGCAATGTGATATTTTTACTGCTACATTTGATCTGTTTTTATGTGACAGAAACCCCAAAGATCATGTTTAAAGGTGTACTTGCTGAAGCCATAGTGTAGAAATGCAGATACAACTTCAGGTGGTGGATTGTTTCATTTGCACAGAAAGATAACGTGTCTAATGATTTGCAGGGTTTCAAAGAGATTCAGCACGACTATTGAACACAAGTCATGCTAAGCCTTTTCTAAGAGATTTCCAATATGTTGAATGACAGAACTAGCATTGGAACCTATATGCTCAAGTTCTGCCAATGGCCATTTTTCTTTTGCAGTATGCATGCATATTCACTTTGAAAGTGAATGACAGTTATTGCAGTATTATCACGGCCCATATATATTCATgcagcgtctcagagtaggagaaaTGACTtgggatcagttttgccttttagatcgcAATGGAtgagattacatggacagggaggACCCACCACAAGCTCTGTCTAGTTTGTCCTCTCACCGGCTATGCATGTGTGTTTTATGGCGCGGTCAAATGATGCTCGTAATCAATGCAACCTGTTGAACAGGTAAACACGTTAATGTTATGCAAATGCTTTTTTTTTGATACAATATAGATTACGATTCCCTTTCACGAGATtttgtactgtttgtgtaatacTGAGCAAGAGCAATGTTACATGTGTTCAATGTCCACAGCCAATAcataagggagggaggagatagcTCCTGTGCTTTTTGATTGACAAGTAAGAGGAAGGGATTGGATGTATCTGTGTCCATATATGGGCATTTCCCAAACAGGCACAGCTACAGACAATTTGATTTGTCATCTTGCATTAGTTTTCTCGCCATCCACCCGACTGTTTTGTAGTTGGTACAGTAACTGCAGTGTTGTAATTTAATGTGTGTTTTTTAGTCACTGTCGGAGagtagttggagcatggtgtgtgAGTAATGGCTTCTGTTGCTTGGACACTGACGTCCTTTCTGGTCTCATTAGAACATGTTTAAAGAACTTAAACCATGACATAGTCGGTGGTCCAGTTGGGGATTTGGCTTTACCAGATAGAAAACGGTCAGTTATACAATGTGAAGGTGAGTGGTTCAGTGTAACCCATAGTCTCGGGTGGGACGGGATCTATTCTGATGGGTCGTATTCCTGAGCCACggaacagaacaaaacagactAAAACATTGAGGGCCTACCTGGACTCGTCAATAATTcatttctgttttctgttgtgtgccctaatgaacacgactctATGATCATCCTGAGTCTATCAGTAGTCACCCACCCTCGTCCTGAAGGGCAACTACGATGTGACTgggcttttgttccagccaagCACTAAACCTGTTTCAGCGAATTAACTCAAGAACTCACTGTTGAGTTTGGTAGTTGTTTTATACCAGCTCTTTAACAATTGATTCAATGTCTCGTTGATAAGTTGAATCACGGCCGTTCTACGTACATGGGTAGCCAGGAAGTGGCTGACCCCAGTCCTCCTTCCACTTCCTGTGCAAAGTCTTTTACCTACTATACTGCCTTacttctctgacctttaacctctgTCCTCTTTGAATTTTAACTTATGTTTCTGTACTACTGTGACTTTCTCCCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624843 True 2322 lncRNA 0.41 1 82112035 82114356

Neighbor

gene id symbol gene type direction distance location
LOC118964938 LOC106562620 coding upstream 4583 82022011 ~ 82107452 (+)
LOC110506160 LOC106562619 coding upstream 92512 81944654 ~ 82019523 (+)
cdkn2aip LOC106587807 coding upstream 223336 81883393 ~ 81888699 (+)
trnap-ugg-9 NA coding upstream 242712 81869250 ~ 81869323 (+)
LOC110506150 LOC106562517 coding upstream 251537 81815343 ~ 81860498 (+)
LOC110526975 LOC106562727 coding downstream 14413 82128769 ~ 82198551 (+)
trnaa-ugc-18 NA coding downstream 35363 82149719 ~ 82149795 (+)
LOC110526669 hypk coding downstream 137496 82251852 ~ 82253308 (+)
LOC118965047 LOC106587629 coding downstream 161701 82276057 ~ 82276380 (+)
vps33b LOC106562628 coding downstream 193188 82307544 ~ 82318126 (+)
G551684 NA non-coding upstream 203303 81908493 ~ 81908732 (+)
G551683 NA non-coding upstream 205806 81905634 ~ 81906229 (+)
G551678 NA non-coding upstream 231893 81878909 ~ 81880142 (+)
G551675 NA non-coding upstream 239419 81872393 ~ 81872616 (+)
G551667 NA non-coding upstream 257281 81854267 ~ 81854754 (+)
G551752 NA non-coding downstream 1036 82115392 ~ 82115740 (+)
G551770 NA non-coding downstream 40272 82154628 ~ 82155340 (+)
G551804 NA non-coding downstream 149439 82263795 ~ 82264106 (+)
G551848 NA non-coding downstream 270561 82384917 ~ 82385727 (+)
G551851 NA non-coding downstream 275092 82389448 ~ 82391425 (+)
LOC110526107 scg3 other upstream 645837 81435094 ~ 81466198 (+)
G551043 NA other upstream 1190599 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1681106 80415414 ~ 80430972 (+)
G551805 NA other downstream 150613 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 362562 82476918 ~ 82483802 (+)
LOC110526694 pcsk6 other downstream 475181 82532518 ~ 82627600 (+)
G551950 NA other downstream 476212 82590568 ~ 82593162 (+)

Expression


Co-expression Network