G552353


Basic Information

Item Value
gene id G552353
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82112036 ~ 82114538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU625623
ctgtacatatatattttttaaaggtaaCCCCCCCTAAAAAGTAAGATACCTAACAAAAACAAAGCAGACATTTTGAAATCCTTCAACAGAAGTGAACAACGATGACATCAACAACATTAGCTCATTATTGGATCATAAAAGACTAGAATAACAAAAAAGAACAAACGGAAATAGTGATATAGCGGGGGAGAAAGTCACAGTAGTACAGAAACATAAGTTAAAATTCAAAGAGGAcagaggttaaaggtcagagaagtAAGGCAGTATAGTAGGTAAAAGACTTTGCACAGGAAGTGGAAGGAGGACTGGGGTCAGCCACTTCCTGGCTACCCATGTACGTAGAACGGCCGTGATTCAACTTATCAACGAGACATTGAATCAATTGTTAAAGAGCTGGTATAAAACAACTACCAAACTCAACAGTGAGTTCTTGAGTTAATTCGCTGAAACAGGTTTAGTGcttggctggaacaaaagcccAGTCACATCGTAGTTGCCCTTCAGGACGAGGGTGGGTGACTACTGATAGACTCAGGATGATCATagagtcgtgttcattagggcacacaacagaaaacagaaatgAATTATTGACGAGTCCAGGTAGGCCCTCAATGTTTTagtctgttttgttctgttccGTGGCTCAGGAATACGACCCATCAGAATAGATCCCGTCCCACCCGAGACTATGGGTTACACTGAACCACTCACCTTCACATTGTATAACTGACCGTTTTCTATCTGGTAAAGCCAAATCCCCAACTGGACCACCGACTATGTCATGGTTTAAGTTCTTTAAACATGTTCTAATGAGACCAGAAAGGACGTCAGTGTCCAAGCAACAGAAGCCATTACTcacacaccatgctccaactactCTCCGACAGTGACTAAAAAACACACATTAAATTACAACACTGCAGTTACTGTACCAACTACAAAACAGTCGGGTGGATGGCGAGAAAACTAATGCAAGATGACAAATCAAATTGTCTGTAGCTGTGCCTGTTTGGGAAATGCCCATATATGGACACAGATACATCCAATCCCTTCCTCTTACTTGTCAATCAAAAAGCACAGGAgctatctcctccctcccttatgTATTGGCTGTGGACATTGAACACATGTAACATTGCTCTTGCTCAgtattacacaaacagtacaaaATCTCGTGAAAGGGAATCGTAATCTATATTGTATCAAAAAAAAAGCATTTGCATAACATTAACGTGTTTACCTGTTCAACAGGTTGCATTGATTACGAGCATCATTTGACCGCGCCATAAAACACACATGCATAGCCGGTGAGAGGACAAACTAGACAGAGCTTGTGGTGGGTcctccctgtccatgtaatctcaTCCATTgcgatctaaaaggcaaaactgatcccaAGTCAtttctcctactctgagacgctgcATGAATATATATGGGCCGTGATAATACTGCAATAACTGTCATTCACTTTCAAAGTGAATATGCATGCATACTGCAAAAGAAAAATGGCCATTGGCAGAACTTGAGCATATAGGTTCCAATGCTAGTTCTGTCATTCAACATATTGGAAATCTCTTAGAAAAGGCTTAGCATGACTTGTGTTCAATAGTCGTGCTGAATCTCTTTGAAACCCTGCAAATCATTAGACACGTTATCTTTCTGTGCAAATGAAACAATCCACCACCTGAAGTTGTATCTGCATTTCTACACTATGGCTTCAGCAAGTACACCTTTAAACATGATCTTTGGGGTTTCTGTCACATAAAAACAGATCAAATGTAGCAGTAAAAATATCACATTGCCATACATTTAAATCTATAGAATGGGAAAAGCTTTGTGCAAAAATGTCACACAAGGCAATGTTAAATGTGTTCCATGTCTGCAGTGTTACTGTTACAGGCTGATGTCAATCGTTACATCATTTTGACCTTTAAACTTTCAACCATCTTAGGGGTCGTTGCTGTAGCGCCGAGTGGGTTTATGGGAGGGTCTGGCTACTGTATGTAAGTCAATCAGAACACTTTCGAGGAAGTAAACCATCCACAGTAAACTACTGGCTGTAGCTTCCCTACGGTGTCCCAAGGTTCATAACTCACAAATACTTCAACACAGCATTACAAGTCAGTACAAAACATGTAATAAAGAGTATTATTAATGGATATAGATGTATAGTAGTAGATAAACAAGTAAAAAATAAACTTCCTCTTTAATGGTATAGGTTGTCCCAGCTCTCTGAGATCCCCGTGTGGTGTGAGAGTTCTGCATATCCATATCCAAAGGCAGGGAAAAACCACAGTCGGCCTGCGGTTCAGTCCATTGGAGTCCAAAAGACGGTGGTGGGGGAGTTGCATCCACTCTGATTGAATCATTGTGACATGAatgaatatatatacacacacacacatatatatacatatatatacatatatatatacacacacacatatgtgtgtgtgtgcgtgtgtatgtacagtgccttgcgaaagtattcggcccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU625623 True 2503 lncRNA 0.40 1 82112036 82114538
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118964939 NA coding downstream 27797 82083451 ~ 82084239 (-)
cartl LOC106562433 coding downstream 172473 81936960 ~ 81939563 (-)
LOC110519456 cart coding downstream 217871 81893009 ~ 81894165 (-)
LOC110506838 tubgcp4 coding downstream 228773 81860488 ~ 81883263 (-)
LOC110506149 bend2 coding downstream 291045 81816182 ~ 81820991 (-)
LOC110517630 serinc4 coding upstream 85989 82200527 ~ 82250360 (-)
LOC110526668 mfap1 coding upstream 138775 82253313 ~ 82257409 (-)
hddc3 NA coding upstream 151775 82266313 ~ 82268199 (-)
LOC110526672 LOC106562627 coding upstream 175160 82289698 ~ 82295943 (-)
LOC118964940 NA coding upstream 191594 82306132 ~ 82308131 (-)
G552355 NA non-coding downstream 169 82111044 ~ 82111867 (-)
G552336 NA non-coding downstream 29771 82081197 ~ 82082265 (-)
G552335 NA non-coding downstream 30951 82080406 ~ 82081085 (-)
G552334 NA non-coding downstream 31768 82078858 ~ 82080268 (-)
G552404 NA non-coding upstream 110187 82224725 ~ 82225156 (-)
G552419 NA non-coding upstream 144186 82258724 ~ 82259038 (-)
G552452 NA non-coding upstream 222370 82336908 ~ 82339725 (-)
G552458 NA non-coding upstream 243285 82357823 ~ 82358030 (-)
G552229 NA other downstream 255602 81853101 ~ 81856434 (-)
G551604 NA other downstream 452782 81657652 ~ 81659254 (-)
LOC110526982 ankdd1a other upstream 318388 82426094 ~ 82444978 (-)
LOC110526691 LOC106562597 other upstream 369933 82481559 ~ 82505982 (-)
G552533 pcsk6 other upstream 449920 82564458 ~ 82566619 (-)
G552571 NA other upstream 495380 82609918 ~ 82617194 (-)
G552558 NA other upstream 499019 82612678 ~ 82620244 (-)

Expression

G552353 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G552353 Expression in each Bioproject

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G552353 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network