G551851


Basic Information

Item Value
gene id G551851
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82389448 ~ 82391425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624978
ATTAATATATTTATTAAAgtctcacatttacataagttcaCAACTATTCAGAGCAAAATAGGGTTGCTGCCACACAGATGGCATCAGTTCTGATGGACTGTACATCACACAATTGCCCAACTCTAAATCAAGACCTTATGCtgtgttcataaccAAGTGGAATTGAGCAAATTATCTAGATTCTAGGCCCTTACTGTCTGAGATTTCAAAATGTTATATCTGTATATAAAGTGTACAAAAAAGCCCAGCTTCTTTTAAAGAAACTGCATTGAATGAACAGTTTCTCAGTGTATAGTGTTGAGAAAATCAGACAatgcatttctaaagactggtatGTTTTCATTTAAAAACACCAGTGATGTCATGGCTTCATTAAATGTGTAGGTAGTTCTAAACGGTTCCATAAAGAAACGTCAAAAACAACCACAATGGGAAAATGTGCTGTCTGACATTATCAAAGCTGATTGGGATCAATTTAAGTCACCCCCCTATCTCGACCCCAGATATCTTACACGTTTCATCTCATACATGGCATActaactgtacatacagtatactagTAATTCCAGTGTTGGATATTTGAAATCCACCACAGAGCAGCCAAACTGATCTTTTTTGAAAAGGTTAACAATTTGACTATAAATACTTGTTCTGTAAAGAACGCTGGTTTCTATGACCTGGCTGACCTCGTCAGAGAGTTGTGAAGAAACAAAATTGCTTCCTAAATTACATCAGAAAGACATGGTGGTTAAAACAAGTATCCTATATTTACCTTAATCCTTGACTGTCAAAAATAAAATGGTGTCAAAACAAAATAAGAGAAAATAGATTTTGGACTTGATACAATCCATTTCCATTAAGGTTTCCCAAACAAGTACTTATCACAAAGAGACACTAGCTACTTTATGAGAAAAAGTAAAAGTATCTTTACATTTAAACAGGATAACgttctttctccttttctctctctctgggaaagATGGGTAGAGAATACTTGGTTAATGTTAATTAAACCTTTGCAACAATTTGGGAACAAACTTTTTCCGATGTATGAAATTGCATAACCTACATCATCATGATCAACACTGATGTAATTCAGATGACATAATTACATTTGAAGTTACAATAATGGTATTTGTAAAATGCCATAGCTTATTAAATCGAAATGGCAATTTCTGAAGTTCCATTTTGGACTGTTTGTTAGTTGTTGGCTGCATCCGCCTGCCTTGGccagctctcctcctctatcccagaGTCATACTCCTCCTCAGACTCTTTAGCAGGTGCTCTggagacacacaaaaaaatattaaattctGCTGCAAATAAATGAAAAGTCATGGTAAAAAACTGTATTTTCAATTAAATTGCTGTGAAACCACACCATATAAGatttgcatgggtcctcagatcctcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624978 True 1420 lncRNA 0.35 2 82389448 82391425

Neighbor

gene id symbol gene type direction distance location
LOC110526680 LOC106562633 coding upstream 24055 82362630 ~ 82365393 (+)
LOC110526684 LOC106587700 coding upstream 33447 82348809 ~ 82356001 (+)
si:ch73-314g15.3 LOC106562630 coding upstream 46247 82331797 ~ 82343201 (+)
LOC110526676 prc1 coding upstream 59075 82318325 ~ 82330373 (+)
vps33b LOC106562628 coding upstream 71322 82307544 ~ 82318126 (+)
LOC110526689 spg21 coding downstream 22092 82413517 ~ 82420631 (+)
LOC118964942 NA coding downstream 80581 82472006 ~ 82476306 (+)
LOC118965048 LOC106587694 coding downstream 127829 82519254 ~ 82529744 (+)
LOC110526694 pcsk6 coding downstream 141093 82532518 ~ 82627600 (+)
LOC110526983 tm6sf1 coding downstream 269263 82660688 ~ 82672272 (+)
G551848 NA non-coding upstream 3721 82384917 ~ 82385727 (+)
G551804 NA non-coding upstream 125342 82263795 ~ 82264106 (+)
G551770 NA non-coding upstream 234108 82154628 ~ 82155340 (+)
G551752 NA non-coding upstream 273708 82115392 ~ 82115740 (+)
G551721 NA non-coding upstream 275092 82112035 ~ 82114356 (+)
G551863 NA non-coding downstream 29540 82420965 ~ 82421244 (+)
G551864 NA non-coding downstream 29932 82421357 ~ 82421616 (+)
G551865 NA non-coding downstream 30200 82421625 ~ 82422120 (+)
G551868 NA non-coding downstream 32833 82424258 ~ 82426367 (+)
G551887 NA non-coding downstream 68527 82459952 ~ 82467343 (+)
G551805 NA other upstream 123699 82264969 ~ 82265749 (+)
LOC110526975 LOC106562727 other upstream 191780 82128769 ~ 82198551 (+)
LOC118964938 LOC106562620 other upstream 329033 82022011 ~ 82107452 (+)
LOC110506150 LOC106562517 other upstream 529190 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 923250 81435094 ~ 81466198 (+)
G551889 LOC106587688 other downstream 85493 82476918 ~ 82483802 (+)
G551950 NA other downstream 199143 82590568 ~ 82593162 (+)
G552080 NA other downstream 523205 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 877744 83183382 ~ 83285498 (+)

Expression


Co-expression Network