G551864


Basic Information

Item Value
gene id G551864
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82421357 ~ 82421616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU624995
tctggaccctgtctttctaaaacgatccgccgccattgttgcaacccctatttaccagcctgttcaacctctctttcgtatcgtccgagatccctaaagatgggaaagctgccgcggtcatccccctcttcaaatggggtggcaccctagacccaaactgttacagacctatatccatcctgccctgcctatctaaagtcttcgaaagccaagttaataaacagataactgaccatttcgaatcccaccgtaactTCTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU624995 True 260 lncRNA 0.49 1 82421357 82421616

Neighbor

gene id symbol gene type direction distance location
LOC110526689 spg21 coding upstream 726 82413517 ~ 82420631 (+)
LOC110526680 LOC106562633 coding upstream 55964 82362630 ~ 82365393 (+)
LOC110526684 LOC106587700 coding upstream 65356 82348809 ~ 82356001 (+)
si:ch73-314g15.3 LOC106562630 coding upstream 78156 82331797 ~ 82343201 (+)
LOC110526676 prc1 coding upstream 90984 82318325 ~ 82330373 (+)
LOC118964942 NA coding downstream 50390 82472006 ~ 82476306 (+)
LOC118965048 LOC106587694 coding downstream 97638 82519254 ~ 82529744 (+)
LOC110526694 pcsk6 coding downstream 110902 82532518 ~ 82627600 (+)
LOC110526983 tm6sf1 coding downstream 239072 82660688 ~ 82672272 (+)
sh3gl3a LOC106583399 coding downstream 393568 82815184 ~ 82861792 (+)
G551863 NA non-coding upstream 113 82420965 ~ 82421244 (+)
G551851 NA non-coding upstream 29932 82389448 ~ 82391425 (+)
G551848 NA non-coding upstream 35630 82384917 ~ 82385727 (+)
G551804 NA non-coding upstream 157251 82263795 ~ 82264106 (+)
G551770 NA non-coding upstream 266017 82154628 ~ 82155340 (+)
G551865 NA non-coding downstream 9 82421625 ~ 82422120 (+)
G551868 NA non-coding downstream 2642 82424258 ~ 82426367 (+)
G551887 NA non-coding downstream 38336 82459952 ~ 82467343 (+)
G551893 NA non-coding downstream 64117 82485733 ~ 82486243 (+)
G551904 NA non-coding downstream 86246 82507862 ~ 82508136 (+)
G551805 NA other upstream 155608 82264969 ~ 82265749 (+)
LOC110526975 LOC106562727 other upstream 223689 82128769 ~ 82198551 (+)
LOC118964938 LOC106562620 other upstream 360942 82022011 ~ 82107452 (+)
LOC110506150 LOC106562517 other upstream 561099 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 955159 81435094 ~ 81466198 (+)
G551889 LOC106587688 other downstream 55302 82476918 ~ 82483802 (+)
G551950 NA other downstream 168952 82590568 ~ 82593162 (+)
G552080 NA other downstream 493014 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 847553 83183382 ~ 83285498 (+)

Expression


Co-expression Network