G551889 (LOC106587688)


Basic Information

Item Value
gene id G551889
gene name LOC106587688
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82476918 ~ 82483802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU625026
ggatattttaaactttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcggccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatttttttccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgactcggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatatttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttacccgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatctaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacagagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagttttaaatatccaataaatgttgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacataaacacaaccCACCTCATACATGATTACTACAACTACATAAACATGATTACTACAACTACATAAACATGATTACTACAACTACATAAACATGATTACTACAACTACATAAACATGATTACTACAACTACATAAACATGATTACTTCAAATGTCATCATGGTTTGATTGGCAAGGATTACAGAGGAAACCAATCTGTATCCATTCAAAACGTGGATTACAAAAAGTTGCAGGCTCTTCCGACATCCCCTAAGACTTAGGTCATTTTGAAGCATCCTTAAACGTATCATTAAAAAGTTTGATCGGGGGTTGTAAGTATTCAAGTAAATATCCTTGGGAAAGTGATGATGATCAATGTGGaatgtaaaaatacatttttaagtaCAAAAAGTACAATCAACCTCCATTTGCAGGAGAAAAGTGAAAGTTGAAAAAATTGCACTTAGCTAAATCTCAGCAGAACACTTGCATAAATATGCTGCATAGTCAGCCAGAATAAGAAAACACCTGTCATCCTTCCAAGCTACTACTTTCCATCACCCTTAATCAATACATTTTCCCTAATTCTCCTTCATATTTAACAATCACCAGCTGTTTCTCTTGGCAGTATTCTCAGAATGTTTTGAGTCTTTTATACGCTTGGCCTGCCTGAGGAACTGGTCTGCTTTCCTCAGCTTCTCCATGGCTCTGGCTAGCAGCTCCTCCGGCGACCTGTCCTCCAGGCTATTGCCCCCCGCTAGGGCCGAGTTCTGCCCAACCTCGGTGCTCCCTTTGGGGACGACGCTCCCCAGGAGCTCCTCTGTATTTTCCAGCTTCAGGGCCACTTCATTTTCAAGATCTGTTAAGTTTTGAGGACCCACGGTGGCCTTTGTCACGGCCACgtctgtgattggctgtttaATGTTTTCACCCAATGAGGCCTCAGAGAGGAGATCCCCCAAAGAGGTGGACATGAGCTTGGCTAAGGGTTTGAAGGGGATGGGGGGACAATGGGAGGCCTGACTGACCCTCACCTGGAGGAAGGTGGAGTGTAGGCCAGAGTGATTGTCCTGGGGGGTCTGGGTCGTAGAAGGGCAGTCCTCCACAGTGCTGGGTCCCAAGCTGCCGGGGGTTTCCGTGTCTCCGTCTTGACTCTCATCCATCAGCGCGTCCAGGCCAGCTTGGCTGCCCATTAGGGCAGCGGTGGAGGCTGCCAAAGTGTCCCTGCTCTCTGACCAATCTTCATCGACATCGATGTCCGAGTGTTGGCCGCTGTCGACTGACTTTTCCTCTTCACGCTCACTCTTCTTTTCCGGGGAGAGGTGGCAGGACACGGGGCTGGAGCAGGAGCTGTCTGGCTCAGGGTCACTCAGAGAGAGAACTACGACTGGGAACTCAGACATAGTCTCAACGACCACAGGAACTTTCAGGTCCTCTGTTTCTTCAGTCGGACTGGTTGTGGTCACCACGGCTGATGTTGGTGAAGTGATAGAGTTGAGTTTCTCTCTTggtgtggtggtgatgatgatgttctTGGTTTTGTCTGTCGCTTGGCTCTTAGGCTCACTTAGGTGGACGTCTTGAGCCACCACCACTGCTTTGGGAGGAGGGAGGACGACAGGCTTCTTCTTTGTGGGAGGTCCGGGAGGGCCAGGGCTCTTTTTGATTGGCTCCGGTGTCTGAACTGACGGCGTTACTGTGAGTTGGGAAGACTTCATTGTCTGAGGTTCTTCATTGGGGGATATATCCACTCCACCACTAGGGGCAGACTCTTGTTCTTGAGCCATGGGCTTGGCAACTTTCTGCGTCTCTTCttctatggtggtggtggtggtgacctCTGGGTGGTCAGTCACAGAGGTTTCAACTTTGACCTCTAGTGGGGTCATGGGTGTTGTAAGCTGAGAGGAAGGagactcctcctcatcctcagccCCCTCAAGGATACTGCTTTGTTGAACGTCAGATACAATTGTTTCAGaaccctcttcctccttctcctctactTCATCCTCTTCACCTTTCTTCCTCATCCCACTAGCCTCCTCTGTACTCTCCTGCACGGCTGTCTGAGTGGGCTTCTTGTCTTTGGATGGTGGGGTGGGCGGCCTATGTTCCTGGCTGGATTGGGAGGCCTCGGCCAGGTTGTCTGTGGAGCCGCCGATTGGTTTGCCGGGAGGGGTGGGCGGTGGTGCTGACTCGAAGCCCTGCTCTGGGCTGCCCTCAGGGCTGGTGTTCCTGGGGGGTTGGTCTCCGGCTGGAGCAGTGGGCTTGGCCT
>TU625028
GGGGCCCTTAGCGGTCAGAAGGGAAGCTTGTAAAATAGGTGTGTTGTCAAATTTGATGTACATCCTGCCATTGAGATTTGGACTGGCAGAGCTTGTCTCAGACATTTTATAAAAGCCCTGAATATTATTTTAACACTTGGAAGTAGTTATTCAAGACAATTAACTTCTCAAGAAAATTATATTTTCATGAACTCCATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACATGATTACTTCAAATGTCATCATGGTTTGATTGGCAAGGATTACAGAGGAAACCAATCTGTATCCATTCAAAACGTGGATTACAAAAAGTTGCAGGCTCTTCCGACATCCCCTAAGACTTAGGTCATTTTGAAGCATCCTTAAACGTATCATTAAAAAGTTTGATCGGGGGTTGTAAGTATTCAAGTAAATATCCTTGGGAAAGTGATGATGATCAATGTGGaatgtaaaaatacatttttaagtaCAAAAAGTACAATCAACCTCCATTTGCAGGAGAAAAGTGAAAGTTGAAAAAATTGCACTTAGCTAAATCTCAGCAGAACACTTGCATAAATATGCTGCATAGTCAGCCAGAATAAGAAAACACCTGTCATCCTTCCAAGCTACTACTTTCCATCACCCTTAATCAATACATTTTCCCTAATTCTCCTTCATATTTAACAATCACCAGCTGTTTCTCTTGGCAGTATTCTCAGAATGTTTTGAGTCTTTTATACGCTTGGCCTGCCTGAGGAACTGGTCTGCTTTCCTCAGCTTCTCCATGGCTCTGGCTAGCAGCTCCTCCGGCGACCTGTCCTCCAGGCTATTGCCCCCCGCTAGGGCCGAGTTCTGCCCAACCTCGGTGCTCCCTTTGGGGACGACGCTCCCCAGGAGCTCCTCTGTATTTTCCAGCTTCAGGGCCACTTCATTTTCAAGATCTGTTAAGTTTTGAGGACCCACGGTGGCCTTTGTCACGGCCACgtctgtgattggctgtttaATGTTTTCACCCAATGAGGCCTCAGAGAGGAGATCCCCCAAAGAGGTGGACATGAGCTTGGCTAAGGGTTTGAAGGGGATGGGGGGACAATGGGAGGCCTGACTGACCCTCACCTGGAGGAAGGTGGAGTGTAGGCCAGAGTGATTGTCCTGGGGGGTCTGGGTCGTAGAAGGGCAGTCCTCCACAGTGCTGGGTCCCAAGCTGCCGGGGGTTTCCGTGTCTCCGTCTTGACTCTCATCCATCAGCGCGTCCAGGCCAGCTTGGCTGCCCATTAGGGCAGCGGTGGAGGCTGCCAAAGTGTCCCTGCTCTCTGACCAATCTTCATCGACATCGATGTCCGAGTGTTGGCCGCTGTCGACTGACTTTTCCTCTTCACGCTCACTCTTCTTTTCCGGGGAGAGGTGGCAGGACACGGGGCTGGAGCAGGAGCTGTCTGGCTCAGGGTCACTCAGAGAGAGAACTACGACTGGGAACTCAGACATAGTCTCAACGACCACAGGAACTTTCAGGTCCTCTGTTTCTTCAGTCGGACTGGTTGTGGTCACCACGGCTGATGTTGGTGAAGTGATAGAGTTGAGTTTCTCTCTTggtgtggtggtgatgatgatgttctTGGTTTTGTCTGTCGCTTGGCTCTTAGGCTCACTTAGGTGGACGTCTTGAGCCACCACCACTGCTTTGGGAGGAGGGAGGACGACAGGCTTCTTCTTTGTGGGAGGTCCGGGAGGGCCAGGGCTCTTTTTGATTGGCTCCGGTGTCTGAACTGACGGCGTTACTGTGAGTTGGGAAGACTTCATTGTCTGAGGTTCTTCATTGGGGGATATATCCACTCCACCACTAGGGGCAGACTCTTGTTCTTGAGCCATGGGCTTGGCAACTTTCTGCGTCTCTTCttctatggtggtggtggtggtgacctCTGGGTGGTCAGTCACAGAGGTTTCAACTTTGACCTCTAGTGGGGTCATGGGTGTTGTAAGCTGAGAGGAAGGagactcctcctcatcctcagccCCCTCAAGGATACTGCTTTGTTGAACGTCAGATACAATTGTTTCAGaaccctcttcctccttctcctctactTCATCCTCTTCACCTTTCTTCCTCATCCCACTAGCCTCCTCTGTACTCTCCTGCACGGCTGTCTGAGTGGGCTTCTTGTCTTTGGATGGTGGGGTGGGCGGCCTATGTTCCTGGCTGGATTGGGAGGCCTCGGCCAGGTTGTCTGTGGAGCCGCCGATTGGTTTGCCGGGAGGGGTGGGCGGTGGTGCTGACTCGAAGCCCTGCTCTGGGCTGCCCTCAGGGCTGGTGTTCCTGGGGGGTTGGTCTCCGGCTGGAGCAGTGGGCTTGGCCT
>TU625030
GGGGCCCTTAGCGGTCAGAAGGGAAGCTTGTAAAATAGGTGTGTTGTCAAATTTGATGTACATCCTGCCATTGAGATTTGGACTGGCAGAGCTTGTCTCAGACATTTTATAAAAGCCCTGAATATTATTTTAACACTTGGAAGTAGTTATTCAAGACAATTAACTTCTCAAGAAAATTATATTTTCATGAACTCCATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTACTACAACTACATAAACACAACCCACCTCATACATGATTActacaactacataaacacaaccCACCTCATACATGATTACTACAACTACATAAACATGATTACTTCAAATGTCATCATGGTTTGATTGGCAAGGATTACAGAGGAAACCAATCTGTATCCATTCAAAACGTGGATTACAAAAAGTTGCAGGCTCTTCCGACATCCCCTAAGACTTAGGTCATTTTGAAGCATCCTTAAACGTATCATTAAAAAGTTTGATCGGGGGTTGTAAGTATTCAAGTAAATATCCTTGGGAAAGTGATGATGATCAATGTGGaatgtaaaaatacatttttaagtaCAAAAAGTACAATCAACCTCCATTTGCAGGAGAAAAGTGAAAGTTGAAAAAATTGCACTTAGCTAAATCTCAGCAGAACACTTGCATAAATATGCTGCATAGTCAGCCAGAATAAGAAAACACCTGTCATCCTTCCAAGCTACTACTTTCCATCACCCTTAATCAATACATTTTCCCTAATTCTCCTTCATATTTAACAATCACCAGCTGTTTCTCTTGGCAGTATTCTCAGAATGTTTTGAGTCTTTTATACGCTTGGCCTGCCTGAGGAACTGGTCTGCTTTCCTCAGCTTCTCCATGGCTCTGGCTAGCAGCTCCTCCGGCGACCTGTCCTCCAGGCTATTGCCCCCCGCTAGGGCCGAGTTCTGCCCAACCTCGGTGCTCCCTTTGGGGACGACGCTCCCCAGGAGCTCCTCTGTATTTTCCAGCTTCAGGGCCACTTCATTTTCAAGATCTGTTAAGTTTTGAGGACCCACGGTGGCCTTTGTCACGGCCACgtctgtgattggctgtttaATGTTTTCACCCAATGAGGCCTCAGAGAGGAGATCCCCCAAAGAGGTGGACATGAGCTTGGCTAAGGGTTTGAAGGGGATGGGGGGACAATGGGAGGCCTGACTGACCCTCACCTGGAGGAAGGTGGAGTGTAGGCCAGAGTGATTGTCCTGGGGGGTCTGGGTCGTAGAAGGGCAGTCCTCCACAGTGCTGGGTCCCAAGCTGCCGGGGGTTTCCGTGTCTCCGTCTTGACTCTCATCCATCAGCGCGTCCAGGCCAGCTTGGCTGCCCATTAGGGCAGCGGTGGAGGCTGCCAAAGTGTCCCTGCTCTCTGACCAATCTTCATCGACATCGATGTCCGAGTGTTGGCCGCTGTCGACTGACTTTTCCTCTTCACGCTCACTCTTCTTTTCCGGGGAGAGGTGGCAGGACACGGGGCTGGAGCAGGAGCTGTCTGGCTCAGGGTCACTCAGAGAGAGAACTACGACTGGGAACTCAGACATAGTCTCAACGACCACAGGAACTTTCAGGTCCTCTGTTTCTTCAGTCGGACTGGTTGTGGTCACCACGGCTGATGTTGGTGAAGTGATAGAGTTGAGTTTCTCTCTTggtgtggtggtgatgatgatgttctTGGTTTTGTCTGTCGCTTGGCTCTTAGGCTCACTTAGGTGGACGTCTTGAGCCACCACCACTGCTTTGGGAGGAGGGAGGACGACAGGCTTCTTCTTTGTGGGAGGTCCGGGAGGGCCAGGGCTCTTTTTGATTGGCTCCGGTGTCTGAACTGACGGCGTTACTGTGAGTTGGGAAGACTTCATTGTCTGAGGTTCTTCATTGGGGGATATATCCACTCCACCACTAGGGGCAGACTCTTGTTCTTGAGCCATGGGCTTGGCAACTTTCTGCGTCTCTTCttctatggtggtggtggtggtgacctCTGGGTGGTCAGTCACAGAGGTTTCAACTTTGACCTCTAGTGGGGTCATGGGTGTTGTAAGCTGAGAGGAAGGagactcctcctcatcctcagccCCCTCAAGGATACTGCTTTGTTGAACGTCAGATACAATTGTTTCAGaaccctcttcctccttctcctctactTCATCCTCTTCACCTTTCTTCCTCATCCCACTAGCCTCCTCTGTACTCTCCTGCACGGCTGTCTGAGTGGGCTTCTTGTCTTTGGATGGTGGGGTGGGCGGCCTATGTTCCTGGCTGGATTGGGAGGCCTCGGCCAGGTTGTCTGTGGAGCCGCCGATTGGTTTGCCGGGAGGGGTGGGCGGTGGTGCTGACTCGAAGCCCTGCTCTGGGCTGCCCTCAGGGCTGGTGTTCCTGGGGGGTTGGTCTCCGGCTGGAGCAGTGGGCTTGGCCT

Function

NR:

description
pleckstrin homology domain-containing family O member 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU625026 False 3731 TUCP 0.47 2 82476918 82483802
TU625028 False 2476 TUCP 0.49 2 82479573 82483802
TU625030 True 2515 TUCP 0.49 3 82479573 82483802

Neighbor

gene id symbol gene type direction distance location
LOC118964942 NA coding upstream 612 82472006 ~ 82476306 (+)
LOC110526689 spg21 coding upstream 56287 82413517 ~ 82420631 (+)
LOC110526680 LOC106562633 coding upstream 111525 82362630 ~ 82365393 (+)
LOC110526684 LOC106587700 coding upstream 120917 82348809 ~ 82356001 (+)
si:ch73-314g15.3 LOC106562630 coding upstream 133717 82331797 ~ 82343201 (+)
LOC118965048 LOC106587694 coding downstream 35452 82519254 ~ 82529744 (+)
LOC110526694 pcsk6 coding downstream 48716 82532518 ~ 82627600 (+)
LOC110526983 tm6sf1 coding downstream 176886 82660688 ~ 82672272 (+)
sh3gl3a LOC106583399 coding downstream 331382 82815184 ~ 82861792 (+)
LOC110506164 LOC106562716 coding downstream 394195 82877997 ~ 82887422 (+)
G551887 NA non-coding upstream 9575 82459952 ~ 82467343 (+)
G551868 NA non-coding upstream 50551 82424258 ~ 82426367 (+)
G551865 NA non-coding upstream 54798 82421625 ~ 82422120 (+)
G551864 NA non-coding upstream 55302 82421357 ~ 82421616 (+)
G551863 NA non-coding upstream 55674 82420965 ~ 82421244 (+)
G551893 NA non-coding downstream 1931 82485733 ~ 82486243 (+)
G551904 NA non-coding downstream 24060 82507862 ~ 82508136 (+)
G551905 NA non-coding downstream 25280 82509082 ~ 82509309 (+)
G551907 NA non-coding downstream 29254 82513056 ~ 82513305 (+)
G551928 NA non-coding downstream 59089 82542891 ~ 82543252 (+)
G551805 NA other upstream 211169 82264969 ~ 82265749 (+)
LOC110526975 LOC106562727 other upstream 279250 82128769 ~ 82198551 (+)
LOC118964938 LOC106562620 other upstream 416503 82022011 ~ 82107452 (+)
LOC110506150 LOC106562517 other upstream 616660 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 1010720 81435094 ~ 81466198 (+)
G551950 NA other downstream 106766 82590568 ~ 82593162 (+)
G552080 NA other downstream 430828 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 785367 83183382 ~ 83285498 (+)
LOC110506171 tmc3 other downstream 1113207 83568391 ~ 83629334 (+)

Expression


Co-expression Network