G551950


Basic Information

Item Value
gene id G551950
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82590568 ~ 82593162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU625104
CACAATAGCATGTTGAGGAGTGAGAGCATGTTGAAGAGTGGGAGAATTTTGAAGAGTGGGAGCTGTTAGGAGTGTGTAtcggaggcgaagtcaggtgcaggagagcagagtgtagtgaacaggcacacttttTATTCCGGTCAAAATGACAGcacaaaataacatcaaatgtgCCCAAAACACGGAACATAGACAAAAAGTAATGCGCGTAACAATATCCACAATATCAAAatacacgtaacacaaacaatccTACACAAAgtcatgatggggaacagaggaataaatacatatgaattgattggggaatgaaaaccaggtgtgcagggaacaagacaaaacaaatggacacatgaaaaatggagcggcgatggctagaaagcctgtgacgtcgaccgccgaacaccgcctgaacaaggagaggaaccaacttcggcggaagtcgtgacaggagCACTTTAAAGAGTGGGAGCATTTTGAAGAGTGGGAGCATTTTGAAGAGTGGGAGCATTTTGAAGAGTTGAAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATTGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGTAATGGAAGCATGTTGAGGAGTGGAAGCAGTTTGAAGGGTTGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTCAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATTTTGAGGAATGGAGCATGTTTAGGAATGGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGTAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGAAGCATGTTGAGGAAATGAAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGTAGCATGTTGAGGAATGGGAGCATGTTGAGGAATGGTAGCATGTTGAGGAGTGGAAGCATTTTGACTGTGTCCATTCTTATTCAGAAAACCTGTATTACTTCGGTAGCTCTTTATTTTACGGTACAGAATTGACCTGGTATTTACTTCTAAATTATCTGGTTTTTACTTAGAAATTACATGGTAAAATGGTAATTACACAATaatacttttaaaaaataaaggagAGTCACAcgctctaggagctcagatgcaaaaaaaatgtatgtccaACGTttggacagacaagctgtctacatcagggtataatgacaaacactgtgggatgactcatttatatagtgtcaaaagacacacaggtgtctgtaatcatggccaggtgcggcctgatatcattgggtaattctcatatattaaaatagcatacaaaaaacataaatggatagcgtacgatcatagatacaatttggctacataagcctacaaacatttacaatagcaaaatcacaataatcacgagaatggcttcagatcaaagtctacgttgagaccgaagggagcgaGGGTCTTTACACAGTAATAACCTAAGAATACTTACTTGTTAATTTGATACTCCAACCAAAGAACACATCTGCACCATTTGGTACCAGGTAGTTACCAATTGTGTGAAATTCTTTGAATTAAATACCAGAAAGTACCATTTGATACCCCTTTATTTCCTAACAAATCTCTggtcatttctctaccataaaacAGTGCTACCATAATACTTCTAATAGAAGATTACAGGAGAGGAATAATGAAGCTAATATAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593221

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU625104 True 2271 TUCP 0.43 2 82590568 82593162

Neighbor

gene id symbol gene type direction distance location
LOC118965048 LOC106587694 coding upstream 60824 82519254 ~ 82529744 (+)
LOC118964942 NA coding upstream 114262 82472006 ~ 82476306 (+)
LOC110526689 spg21 coding upstream 169937 82413517 ~ 82420631 (+)
LOC110526680 LOC106562633 coding upstream 225175 82362630 ~ 82365393 (+)
LOC110526684 LOC106587700 coding upstream 234567 82348809 ~ 82356001 (+)
LOC110526983 tm6sf1 coding downstream 67526 82660688 ~ 82672272 (+)
sh3gl3a LOC106583399 coding downstream 222022 82815184 ~ 82861792 (+)
LOC110506164 LOC106562716 coding downstream 284835 82877997 ~ 82887422 (+)
LOC110506865 LOC106594052 coding downstream 326786 82919948 ~ 83169938 (+)
LOC110506168 efl1 coding downstream 590220 83183382 ~ 83285498 (+)
G551946 NA non-coding upstream 9004 82581301 ~ 82581564 (+)
G551928 NA non-coding upstream 47316 82542891 ~ 82543252 (+)
G551907 NA non-coding upstream 77263 82513056 ~ 82513305 (+)
G551905 NA non-coding upstream 81259 82509082 ~ 82509309 (+)
G551904 NA non-coding upstream 82432 82507862 ~ 82508136 (+)
LOC110526694 pcsk6 non-coding downstream 11781 82532518 ~ 82627600 (+)
G551920 NA non-coding downstream 19516 82612678 ~ 82618231 (+)
G551965 LOC106562729 non-coding downstream 53568 82646730 ~ 82657325 (+)
G551976 LOC106587709 non-coding downstream 74831 82667993 ~ 82668753 (+)
G551967 NA non-coding downstream 81180 82674342 ~ 82675259 (+)
G551889 LOC106587688 other upstream 106766 82476918 ~ 82483802 (+)
G551805 NA other upstream 324819 82264969 ~ 82265749 (+)
LOC110526975 LOC106562727 other upstream 392900 82128769 ~ 82198551 (+)
LOC118964938 LOC106562620 other upstream 530153 82022011 ~ 82107452 (+)
LOC110506150 LOC106562517 other upstream 730310 81815343 ~ 81860498 (+)
G552080 NA other downstream 321468 82914630 ~ 82915052 (+)
LOC110506171 tmc3 other downstream 1003847 83568391 ~ 83629334 (+)
LOC110526987 star5 other downstream 1041199 83633613 ~ 83646883 (+)
G553218 mesd1 other downstream 1143714 83736876 ~ 83738690 (+)

Expression


Co-expression Network