G553384


Basic Information

Item Value
gene id G553384
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 83643336 ~ 83646874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU626842
GTAGTTTTTAATCCAGATGCTGGTGAAACACAAAACCTGCTGGGTGGAACATACAGTACAGTCCTACGGTACAGTAGAGTGCAGGTCAGGATTAGGGTCGCAAAATTGTGGTAGCTCTCCCCAATTTCCCAGAAATCCTGTTTGGAGGATTTCCAGATTCCCTGCGTATTCCCTACTGATTCCAGGAATCCTGTTTGGAGGGTTTCCTACTGATTCCAGGAATCTGCCAACTGGGATTTCAGGAAAATTTGGAACATTTTTGAAAAGTTACCAGAATTCATAACCCTAATCCTGACCtaaaaaaacatgttattttcCTGTGTTGCTTTTATTGACAACTGAACTCATAGTATATTTCAATAGCAGCTATTTTCCATAGCAGCTGTGCTTTCCAATCAGGAGCTGAGGACAACAAACGGCATTCAAAACATACACATCTGTCCCAAAACGCATGATGgagtacattttaaaaacaagccaCCAGTAGACAATGTGTTCTCTGACATTAAAACAGCAATACACTGTAGGTAGGTATGATCTTCAGGCTCCACTTACAGTACAATAACACACATCAAACAATGCCTTCATAGTATTACACCAACAAAAGGCAAacaatgatttaaaaaaagcaaGCATATAGGACTTGGTTGTGGATGAGGTGGAATGCAATGCACTTGTAAAGGTTCGTCAGTTAAGGTTATTATCCACTCGGGATAAGAAAAGGACGTTAAGTAGTGTGTTTTCATTTCAAAAGGAAACTTAACCACAAAGCTTCTAAAAAGATTGATCTAAAACATCATTAGTATGATGGCTTATCATCATACATGTAGAGGACTCAGCAGGCATGCAGATGGTTgactgtacattactgtaaagACACCTTCTAGGGCTATACTCTGAGGAGGCTTCCACTCCCCCTAATAGGGCTGTATCTCAAAACTCTGAAGAGGCTTCCTCAACCAACTAGGGATATATCTCACTACTATTCATGCTTGCTCTCATTGTTTCCCTTCACTGATGATTTTTTTAAAAGCTACGGAGACGCACCCTGGCCTAGACAGATGACCATGCCCTCTTGTGCCATAACAAAGACAGTGGTTTTCTCAATTCTATGCTGGTAATACATTTCTTTACAGTGTAAAATGACACACTAGTCACAACTGATGCCATATGGCAGTCCTATGCTGCTGCGCTTCAAAATATGTTGGAATCTATAGCTGTCCCATATGGCATCCtacttcctatatagtgcactaatttggaCCAGTGACTTATGGGACACGTACCCCACTGAATAAAACCCTAAATCCTTCAGAAGCTCTCCTATTTGAGGGGATGTCCCTTTGTCCATTCTTCATTAGATGAAGCTGTTCATATTGCCATTTGCCCATACATACTGCAGATAACTTTGCTTAAGAATAATGCAGTGTTCTTAGTATTCACATCTACATAGAGAAAAGTAACTGAGGCAGGAATCCTTGCTTGGAGGTTAGGCGTCTATAAAGCGGGCAGATGTTAAGGTAAGGAACAGctGCCGGCTGTATATACACCCTCTAAAGGTTACtggttaaagctggaatcctcAACGGTAAAACAACCATGTTCATAATGCTTTCcagttactgcaaacaacaaacACGTTGACATCATCGCACTGCACGATAGTAGAGCACAATATGTACTGCATTTCATAACCATGCTGCACGACACTCCTCAGCTcagcaacaacaataacaatgctggtggggcagccagtggcACCATTTCCCCCtactgcggattccatctttaGGTATTGGTTAAAGGGCTGTGGAGACAGGTTAAACCAGAACATTTCAAGTACAGTACTACCGTATATAAAGGACAACAAAAAATGAGGTATGACTCATCCCAATGGAATCCGATTCCATTCTGGGGTTCCTGTAAGGTCCATGCAACATGCATGGTACTGTAGGTAGCCAGTGTAACAGAATGGACTGTATTCAACAGCAACAGTACAAAAGGGAAGGAGGACATATCCTCCGTGTGTTTAGGACACTAAATACAAAATATAGATTTCAAATCTATTCTCATTCTTTTGTGGTGGGAAAAAGGGGGGAAATGCATCACTAAATAGGAAATGTACAGGGAATATTTGTTTTGGAAGTAGAGTTTGGCAAAATTGACCTCTCTAGATCTAGTCTTAAAGGTGCGGCCCAGAGTGCTTTTTCCAGGGTTGAATGAATGAAATTAGAACAGACACTCAACCTTTTTGTAAGACTACACTAGTGGCCACCATACCTGGTCCAAGAGAGCAACAGTACCAGGGATGCAGGCTTTTTGctccagcactaacacaccatTATTACACAAATGAACCAAGACCTCAACGACCTGAAATCAGCTGTGTTAGTGCTGGGACAAACAAGCTGCACACTTCCTTCCCTCATATCATCCAATATCATCTCCCTTTAAGCTCAGATACAGTTTGCTCCAAGCCAAGGCCAGGTGACCACTCTTTTAAAGAGGCTGTACAGAAATTGAGTTGCTAATTGTTTATCTACATTTTTGGCTTGAGTGTTGCCTGTATGGTTgatataaaatatttatttactCATGAAACAACACAATCCTTATTTTTAGTCTAGAAAGATATGGTCTGGGGAGGTGTGCCCCATGCTCTCAAATAAGGATTTTTCAAATCAATCTGTCCCTTTCAGTTAAAAAGCCCCCTGAGGTGAAAAGTTCCATATAGCCTCTTTAAAACTAAACCATTCACATAGCTAATCATTGTGTTTTTTGGTCCCGCTGAatgctggtcccagatctgagtATCACCTGGTGCCAGGAGTTGGTTatgcagcacaaacagatctgggaccagggctaAGGGAAGGTATAGTATGAGTGTATCAGTGGTCCTTGAGGGACTTGATGGCCTTGGCCAGGTTGCTGTAGAACTCCACCATGCTGGATGGGAAGAAAGAGTCGACCACGGAGCGAGGCAGGAAGCCCCCCAGGTCCGTCTGGAAGAAACTGAACAGCTGGGTTTTGTTTGGCT

Function

NR:

description
stAR-related lipid transfer protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU626842 True 3040 lncRNA 0.42 4 83643336 83646874
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506170 NA coding downstream 100790 83529340 ~ 83542546 (-)
LOC110512367 LOC106562561 coding downstream 459968 83173467 ~ 83183368 (-)
LOC110506862 LOC106562715 coding downstream 735403 82887425 ~ 82907933 (-)
LOC110506861 LOC106562717 coding downstream 774693 82865251 ~ 82868643 (-)
bnc1 LOC106592271 coding downstream 912659 82704287 ~ 82730677 (-)
LOC100136088 LOC106587743 coding upstream 397 83647271 ~ 83704964 (-)
LOC110526710 mesd1 coding upstream 89962 83736836 ~ 83738715 (-)
LOC118964944 cemip coding upstream 109349 83756223 ~ 83912000 (-)
LOC110526992 NA coding upstream 219534 83866408 ~ 83868699 (-)
LOC110526720 LOC106562647 coding upstream 278700 83925574 ~ 83954299 (-)
G553375 NA non-coding downstream 9163 83633632 ~ 83634173 (-)
G553373 NA non-coding downstream 11455 83631669 ~ 83631881 (-)
G553371 NA non-coding downstream 12187 83630850 ~ 83631149 (-)
G553366 NA non-coding downstream 17741 83625327 ~ 83625595 (-)
G553363 NA non-coding downstream 21880 83602880 ~ 83621456 (-)
G553387 NA non-coding upstream 14513 83661387 ~ 83662610 (-)
G553388 NA non-coding upstream 15805 83662679 ~ 83662894 (-)
G553404 NA non-coding upstream 61843 83708717 ~ 83709973 (-)
G553407 NA non-coding upstream 66045 83712919 ~ 83713263 (-)
G553411 NA non-coding upstream 71583 83718457 ~ 83719408 (-)
G552980 NA other downstream 270140 83345201 ~ 83373196 (-)
G552584 LOC106587709 other downstream 976891 82665477 ~ 82666445 (-)
G552558 NA other downstream 1023092 82612678 ~ 82620244 (-)
G552571 NA other downstream 1026142 82609918 ~ 82617194 (-)
G552533 pcsk6 other downstream 1076717 82564458 ~ 82566619 (-)
G553491 NA other upstream 229340 83876214 ~ 83879504 (-)
G553707 NA other upstream 451138 84098012 ~ 84175022 (-)
G554191 NA other upstream 1005213 84652087 ~ 84652416 (-)
LOC110517996 cers3 other upstream 1066834 84699131 ~ 84727986 (-)

Expression

G553384 Expression in all Baseline Samples

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G553384 Expression in each Bioproject

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G553384 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network