G553734 (LOC106562659)


Basic Information

Item Value
gene id G553734
gene name LOC106562659
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 84206422 ~ 84209097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU627265
AGAGGGCTAACACAGTATCGTGGTGTGCAGGAAACCTAGGTTCAAACCTAGCTGGGTTCATTAGAAAGAAGGTAACATGGAAGGATACTTATTTAAAATGTGTAATGGAGACACTGGCTTTGCAGCCTTTTGATATACCATTCAGTGTTCATCATAAAATAATAGTTAAACTAGATCTTATATTCAAAATCATATGTTTATTGTTGTGGTCCAGCCTTGAAGTGGAAATGTAGGCATGAATCAATCCATTAATCGATTAGGCTACATGTTACTGTCTGTAATAAAGGTATTATTGTGCAGTAATGATGAACAAACACTACATGcaatacaacacagagacactgtAAAGACATTCCAATAATAAACAGACCTCATACACATGATCACATGATTCTCATTCTGGGTAAGAtactggatatCAGCTGATACAGCACAGATATAGAGAACATTCTGAAATTAATGAATAGTCATGATTGGAAATGACAGCTCTGGACTAATGCCCAGATGTTGGATACGTCTCCCCAAACTGATCCTTTACAGTTCTCTATTGAGAGGAAGGGAAGATTGACTGACAATAACAGAATCATTCACACATTTTGTGTCTGCTCTGATAGGTGCTCTGGCAGTCATATTTTCATTGTGAATTGAGCTGAATCGACAAAGCTGCCTCAGTGTCCCAAAAATGTATCAGGTCTCAGAATCTGAAGAAAGGTTCATTTCCTCTGACACTGTTGCATCAACGTTGACCAGTTTAGACTGAGAGGCAGTGTTACTCCACCTCCTTTTGACACAAATGAAAATGCTGAATAGAATAAGAATCAGCAGCATCACCAGTAGAACTGAGAGAGTGGATAGGTGAACTCTCTCTGCCCCAGACTCCCAACTGACATCCAGCTTGTTGTCCAGACTGAGGTGAGAGGCAGTACAGGTGTAGTTATGTCTCTTCTTTAGCTCCTCAGTACTGACCTCCAGACGCTTCCTCAGCTGGTAGGTCCTGTCTCCACTAGGCAGAACCTCCCCCCCTGTCAGCTCCTGTTCTGCCACTGGCTGGCCGTCTCTCAGCAGGGTCAGGTTGATGTGGCGGGGATAGAAACCAAACGCCAGGCAGCTCACCTGGAACCCTCCAGAAACCTCTTTCTTTATCAACCTGAGTCTGGGAGGGACTTTACGCATCATAAcgttcttctctctcttcaggaTTGTCTTCAGTGTTCTGATGCAAAGGGTAAGTAAAACATTCTCATAAAGAATTTTTTCCTGTAATTGcctcatcccatcccatccttgcAGTAGTTTACCAGCATCATATGTAAAATGTGTCATGTTGTAATATATTGCATGATCTACAAAAACTGCATTGAAAGTATTCTTTGTCATGATCAGGGCTGGTTCACCATTGTCAAACATCTCACAGCCAGCCATTCTTTGCTGAACTTGAACACCTTCCGTGAGATTCAAGTGGTGCTTTAGGTGAAAGTATCTCTCCTTCATGTGGTGGTACATAACTCCAAATACAAAATCTCCGTTCTTAGCTTCATCATCATGTATTTTGTCTGAGGTGTTATGTCCCTTGTAGATGAAGTGTTTCATGTTGGAGTCATAGTAAGTCACTTGAACATCATCCAACATCACCACAACCGTAAACTCAGGGAAAGGCGTCTCTCCACTTATATATGTTGCAAGTGCCCACAGAGAATGTGATCCTGAACCTGGGAGAGCAGTTATATTAAAATGAGTTAtgaacattttatattttataacATAACAAATCATTTAATGAGTTGAGATAAAGTAAATAGTCCATATTACCTGAGTTGACAATGGTGCAAAAGGAAAGAACAAACAAAAAGACAGACAGTTTGCCCATGATTTAGAAAATGTAGCCTCGCGTAGCAAGTTTCTAAGCTCTCAAGAGTGTCTGACAGACTTCCCCTTTCTTTTAGCTATGAATAACAATGTGCTACACAGTTGGTTGTGTAGCTTTTTGGGGGACAATACCAAATTCACGTAGAAATGTACGTTATAGATATGTCATTCTCAATGAAAGCAAGTCTGAGAAGCGGTATATCCGTTCTATTTCTGATATTTCTATGCTCCCTTTTATAAAAGCGCTACTGCCCCTGAAATATCACTTCTCGTTTAGAAAATGTCCtgtgtggcatcgatatgagacagaaacatttattctagtgtcaacattgactacaaagtgtaaataggataactttggtcataaagtcagtctcgtccaaaaTGGAGATTTGCGAGATTATAGGAAAAAAGTGTGTCACTGGAATTACTAAAGCCAATGATAatgatgcatcccaaatggcaccctattgtctatatagtgcacttcttttgaccagggcccatagtgaaccatgtagggaatagagtgccatttggaacgtatcCTCTGAGCACCTGCCCTTTACATAATTAATAGAATGTAGGTTAGATAA

Function

NR:

description
major histocompatibility complex class I-related gene protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU627265 True 2465 lncRNA 0.40 2 84206422 84209097
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526723 arnt2 coding downstream 116998 83978404 ~ 84089424 (-)
LOC110526720 LOC106562647 coding downstream 252123 83925574 ~ 83954299 (-)
LOC118964944 cemip coding downstream 294422 83756223 ~ 83912000 (-)
LOC110526992 NA coding downstream 337723 83866408 ~ 83868699 (-)
LOC110526710 mesd1 coding downstream 467707 83736836 ~ 83738715 (-)
LOC110506870 fah coding upstream 17164 84226261 ~ 84250541 (-)
LOC110506882 LOC106562652 coding upstream 41899 84250996 ~ 84267954 (-)
LOC118964949 NA coding upstream 69158 84278255 ~ 84278855 (-)
LOC118964948 NA coding upstream 69800 84278897 ~ 84280568 (-)
LOC110512412 LOC106562588 coding upstream 156592 84363849 ~ 84413230 (-)
G553727 NA non-coding downstream 32202 84173799 ~ 84174220 (-)
G553720 NA non-coding downstream 62880 84142296 ~ 84143542 (-)
G553711 NA non-coding downstream 102153 84101681 ~ 84104269 (-)
G553635 NA non-coding downstream 127088 84078860 ~ 84079334 (-)
G553748 NA non-coding upstream 32313 84241410 ~ 84244889 (-)
G553749 NA non-coding upstream 35864 84244961 ~ 84246256 (-)
G553754 NA non-coding upstream 66333 84275430 ~ 84275813 (-)
G553756 NA non-coding upstream 68395 84277492 ~ 84280533 (-)
G553762 NA non-coding upstream 79697 84288794 ~ 84289034 (-)
G553707 NA other downstream 31400 84098012 ~ 84175022 (-)
G553491 NA other downstream 326918 83876214 ~ 83879504 (-)
G552980 NA other downstream 833226 83345201 ~ 83373196 (-)
G552584 LOC106587709 other downstream 1539977 82665477 ~ 82666445 (-)
G554191 NA other upstream 442990 84652087 ~ 84652416 (-)
LOC110517996 cers3 other upstream 504611 84699131 ~ 84727986 (-)
G554286 LOC106591282 other upstream 691271 84900368 ~ 84914202 (-)
G554658 NA other upstream 1001657 85210754 ~ 85211990 (-)
G554679 NA other upstream 1031902 85240999 ~ 85317114 (-)

Expression

G553734(LOC106562659) Expression in all Baseline Samples

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G553734(LOC106562659) Expression in each Bioproject

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G553734(LOC106562659) Expression in each Sample
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Co-expression Network