G554100 (LOC106587790)


Basic Information

Item Value
gene id G554100
gene name LOC106587790
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85079852 ~ 85080336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU627728
AGACACACTGCACGCCGGCAAACCTCCGCACGCAGCGGCCCACCTCAACGTCTTCATGCGTGGTGTACATCTCCTGCAGGCACTGGCCGATGTGAGGAACCATCCGGCGCAGCACCTCGCGGCTCATGATCACGCCGGGGCCACCCATGCAGAAGTTCTCACCGGGCTCCAGCGCCAGCTTGCCCAGCTCGTCGCGGGCGCCCATGCCCGTCTGGCCCAGGAAGAGGGCCTCGCTGCTGTTGAGCGAGCGCAGGAAGCCCTCCAGGCGCTCGCTCTTGATGTACACATCATCGTCGGCCCGCATGAACCACTCATATTGGTCCAGGTAGTGATCGTGCATGTACTTGAGCATCATGAAGGACTTCTTCTGCGGTGGGTAGGAGTCGTCCACGTTGTGCAGCGCCacgatggggatggggatggtggtgtCCGAACCCTCGCTGGAGAAGAACTCCACATGGCCCGGGATGGTCTGAGCCCACgtt

Function

NR:

description
chondroitin sulfate synthase 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU627728 True 485 TUCP 0.63 1 85079852 85080336

Neighbor

gene id symbol gene type direction distance location
LOC110526993 LOC106562571 coding upstream 108278 84819145 ~ 84971574 (+)
LOC118964952 NA coding upstream 168462 84907780 ~ 84911390 (+)
LOC110511357 LOC106562593 coding upstream 264658 84779935 ~ 84815194 (+)
asb7 LOC106562481 coding upstream 335510 84734164 ~ 84744342 (+)
LOC118964950 NA coding upstream 770947 84290431 ~ 84308905 (+)
trnaa-ugc-19 NA coding downstream 116 85080452 ~ 85080524 (+)
LOC110506910 snrpa1 coding downstream 23812 85104148 ~ 85107300 (+)
LOC110506919 LOC106593804 coding downstream 43855 85124191 ~ 85126313 (+)
LOC110506923 LOC106562745 coding downstream 74692 85155028 ~ 85167703 (+)
LOC118965049 NA coding downstream 102843 85183179 ~ 85184324 (+)
G554099 NA non-coding upstream 3764 85075821 ~ 85076088 (+)
G554078 NA non-coding upstream 49598 85030013 ~ 85030254 (+)
G554043 NA non-coding upstream 154969 84924632 ~ 84924883 (+)
G554010 NA non-coding upstream 232999 84837834 ~ 84846853 (+)
G554102 chsy1 non-coding downstream 2973 85083309 ~ 85083972 (+)
G554364 NA non-coding downstream 9453 85089789 ~ 85090001 (+)
G554366 NA non-coding downstream 11415 85091751 ~ 85092652 (+)
G554367 NA non-coding downstream 14366 85094702 ~ 85095052 (+)
G554013 NA other upstream 221919 84855908 ~ 84857933 (+)
G553978 NA other upstream 324977 84754423 ~ 84754875 (+)
G553954 NA other upstream 333591 84745607 ~ 84746465 (+)
G554363 NA other downstream 8568 85088904 ~ 85089527 (+)
G554423 NA other downstream 144426 85224762 ~ 85225164 (+)
LOC110526726 pax6 other downstream 723509 85781791 ~ 85806164 (+)
G554907 NA other downstream 732309 85812645 ~ 85814303 (+)

Expression


Co-expression Network