G554496


Basic Information

Item Value
gene id G554496
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85464433 ~ 85464712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU628216
TGGAAGAAGTGTGGGACGAGCAGAGGAGCAGGGCCGCTATTGGACACGCAGTCAGAATGTCTGAGTGTGATCAATCTTTCTTCACATCCCATCACCACTTCATGTGAGTTGGCCTTGAGTAAAGGCTGATCTTTCATCCCCACTGCATCACGTAATGGTTCTGACACTACAATAGTTTCAGAAATGATTTTGTACATTGAGACTTAGGAAGATCTTCTGCCCCATAAATGTGGATGTGTTAAGTATGGGTGAGACCAGTGTTCAGGCTATGGGTGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU628216 True 280 lncRNA 0.46 1 85464433 85464712

Neighbor

gene id symbol gene type direction distance location
LOC110506914 NA coding upstream 160943 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 190493 85221913 ~ 85273940 (+)
LOC118965050 NA coding upstream 243340 85217690 ~ 85221093 (+)
LOC110506925 LOC106591450 coding upstream 266792 85188254 ~ 85197641 (+)
LOC118965049 NA coding upstream 280109 85183179 ~ 85184324 (+)
cstf3 cstf3 coding downstream 113400 85578112 ~ 85596032 (+)
wt1b LOC106587831 coding downstream 232711 85697423 ~ 85718907 (+)
LOC110526726 pax6 coding downstream 317079 85781791 ~ 85806164 (+)
LOC110526731 LOC107719794 coding downstream 469966 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 604576 86069288 ~ 86069806 (+)
G554494 NA non-coding upstream 3623 85460598 ~ 85460810 (+)
G554486 NA non-coding upstream 11921 85447552 ~ 85452512 (+)
G554462 NA non-coding upstream 80984 85383185 ~ 85383449 (+)
G554461 NA non-coding upstream 86906 85377196 ~ 85377527 (+)
G554459 NA non-coding upstream 89791 85374302 ~ 85374642 (+)
G554500 NA non-coding downstream 4250 85468962 ~ 85469496 (+)
G554501 NA non-coding downstream 5629 85470341 ~ 85470586 (+)
G554504 NA non-coding downstream 8108 85472820 ~ 85473140 (+)
G554507 NA non-coding downstream 13580 85478292 ~ 85478530 (+)
G554491 NA non-coding downstream 18959 85483671 ~ 85488118 (+)
G554423 NA other upstream 239269 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 357447 85104148 ~ 85107300 (+)
G554363 NA other upstream 374906 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 384097 85079852 ~ 85080336 (+)
LOC110526993 LOC106562571 other upstream 492883 84819145 ~ 84971574 (+)
G554907 NA other downstream 347933 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 706972 86171652 ~ 86291885 (+)
G555192 NA other downstream 827366 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 886234 86350925 ~ 86353193 (+)

Expression


Co-expression Network