G554491


Basic Information

Item Value
gene id G554491
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85483671 ~ 85488118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU628211
ACTCACCAAAAGAGTCACCTGGAAACCCGCTTAGCGTGACTAAGTAGCAAAGGCTTGGTCACACCTAAATCACTGAGAACTAGAGGAAACACTATCAAACTGTTAAGAGACATCACATCCAGATCATTCCTTTCCCCAGTCCTCGTACTGGAAATATTGCACAGTGCAAATTGCTACATGGCAAACTAGTGTGGCATAAAACCAACAAAAgctaaacaaaaaataaaaacaaagccacaaaaaaaatctacaagTATTAAAAACAGTAACAGTTCAGATTATAACAAGTCTATTATTTAGATGATCTAAACAGATGATTCTATAAGTTGCAGCATGAATTTACCTTTAAACAGACACAGTCGACCAGAACGCCCAAAAAGGAGAAAACAGGTTGAGAACGGATCAAAAACCAAATAGTAAGTATTGAAgtgtaacacagtaacacattgAACAAACACATAGACCCTGAATCAACATCTTCACACCAGATTAGAGGATTCTTCAAAATCATAAATGAATCATACTGATCATTTTACAAACTGCTATGTCTTCTGTTGTTACGTTTCATCTCAAAAATGTTGTACGAGTTCTCTGAAAACGGTTCATTCATGTGTCCAGTAGTTGTCATATGGAGTTATAACTGGAGAAATAAAAACAGTCTAGGATCATACTTTGTATCCATCTGTGTTTTTAAGTGTGGGAGAGTTTGTGCAGGCGCATTGCTGGTGAATACCATTACACAGGAACAAAGTCACAGTTAACATGCTTATATCACTGGAGAACACATATCAAGCACTCCAGGTCTGCCAAGTTCATGCCTTGTCGTAATTTCAGCTTTTTACCTAAATAAAAGATGTCATAACAAAAGCATGAAACTGAAAACATGGTTGATAAAACACCTGTCCGGCAATATTTTGGTGTTGAAATGTATAATACCTTACGCTCCTCAAGAGTAATGAATTTCAAGTGGTGCCACAATAATCTCCAGAGAGCTCCTTAACACAACGCAAACTAAATGTTTATTCCAGAGCAATTCTCTAACGTCTTATATTAACAGACTCTGTTTGGTCAATCAGCCCTTTGCGAACAGCAACAGTTTGTGGTTAAAGTCTAGAAGTCCTCTGGACTCAGTTCAGAGTTCTCCTTAACTACTCAGTCCTACAATGAGTCCACCATGTGTTATCCACTGGTTCTGACTGTCATGGTTGCAAGGTGTTTAGTCTATTGACAATGTGGGGAAAATGACAGACTTGGTGTCAGTATTTCCCCACAGATTAGTGCAGCTGACTCAGTGGTGTATTTGCACAGTATCGGAGCTGGCAGGAGGAGATGTAAGAACACTTGGTGGTACAAAGACCATAACGTTGAAGTATTGCATTTGCTGTTCAACAAGAGTGACTATCGAGAGGACTGTTAAATCAGCACGTCACTCAAAGAgcctctcggtgtgtgtgtgagtgtgtgtgtgtgagtgagagacttTGTTGGCCTATATCTATTAAACACATATGCCCTCTACACTACTGTCATGACAACGCTCATTAAACAAGTATTTTTCTAATCCCTGTTATGAGAGGTTGAATGACAGTCCGGGTGTGAAACGTTCCATTTTCTCTAGGTGATTTTTGGTCAAGTGGCCATTACTAACTCATTACTAACTCATTACTAACTTAATTCTGCAAGATGGATTTTTGTTAGATCCtcaacccctcctccccctccaacacagagcaggtagaggagaggggtactGTTACTGTATAAGGGACTACCATTGTCCCTGTCCCTATTTCGCTGACCCTCTGATTCTCAAGGCACAAGCACAGTGCTGCTCACACTGTCTGAACATCAGTACAGAACATATATGCCCAGAGACCTCCATTGATAAACACCCCTCTGTTATGAGACACTTCTAAAGGGGAGAGCGATACAATGGAGAAACCTCCTAAACAAACAGAAGGCAGATTATTCCAATATGGAACCAATGTAGAAGGGGAACCACTCATGTCACGGACAGTGACAATACTGAACAGATTTAAACGTTTGAGTAAAATCCATATTTTAAAAGGAAATAATCATTTACATTTATAAAATATTGAATGGGAACAAACACCTTGGGCTAAATTAGACATATTTTGTGTTTAATTCCCCGCGGGACCATGAGGAGTCACTACGACAACCCCTTACTAGCAGACTACTGACAGGTTGTTTGTTAGTGGTGTGACTTGGGGATAACATGTTACATACTGTAAGCCTTCCATTGAGTGTCCTGCTACCTCACAGTGCTCCTGCCATACATAACAGACGCTGTTAACTCAAATTACTACCATGATGAAGAAAGTTAAATCAATCTTGCAAGCTATAGCTTTACATGTTTACAAAACGGCAATATGAAAACATACAAAAAATGAAATGACATTGAtacatccatttatatgcagtgACGAGCCCAGAACGGTTAATAAGGATGAAATACTGCAAaaacacacagacccccaaaaCCAGAACGAATGCAACTAACGTCCATCAGCAATACAGTAGTTACAATGACGCTTCAAACATGAACGCAGAAAACCCCACACAAATCAAAACCACTTCTATTTCAGATAATTAGGGACCTATACAAAAATAGGAACGCTAGTTTTGAACTAAGAGAAATCACCTAATTTCACAGCTGTGGATCATATAGCAGCTTATCTATGATACATTCAAGAAAAATGAGACGGCTTATTAAAATGGCCAGAAAAAGCTAAACATAACCTCAGCCATGTATTATAaatgtttttctatatttttaaatACCATTTGTTGAGATGTAACCCCAGCTCTACGACTATAGTATACTAGATAGAGGTCTATTGTGTAAAAACAGAATATATCTAGCTACCTTGCTCAGGAAATGAATTACAGTCTTTGGTGCTGCACAAGCAACTTCATTTGAAAAGACGAAAAACGTAACGCACAGAACTAgcaaaaacaaatggaaaaatgcacacagcatatatatatatatatattctccctGACGGAATGTATAAAATAAGCAGTCAACACCAATAAACCTTAAACAAATGGTATAATGTAAAGGGAAAAAAGTTAACTTTGTCACATGCATAAATGAGAGAACTGCACGCGACAAACTCACACCTTATTAAGCATCTGCACTAAGTAGACTAGctcatgtatatgtatatatatatatatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtcaaatactGCATGGTCTGCTCAGGCTTAGAAGAATCCATACGGTTAGTGAATTAGCATTGTTGTCCTCAGCTAGTCAACGCCCACCACACTGGTAACGCAGATAGAAAAAAGAAACACACTCaaacatttttctttttttaaatacaaagacaaaacaaattaaAATCAACATCTATTTAGAGATTGTATTGCAGTTTCATCGAACAGTACAAACACTGTTAGTAGTAAGAGTTTCACTAAATAGAAATTGATTATGAAATATTAAGCAAATATTCAATGCTTGCTCTTTGTCCACTAGTTCATTCAGGGGGGAGGACGATGACAGAGAAGGAGCATGTAATAACGGACCAGCGAGCATCTGCTACAGCCAAGCACGTCGTCCTTCTTTAAGGAACAAAAGACTACCTCactacacactgaaatatacacCGAATCCAAACAGTAAGCACCGCTATCCGCGATACCTCACGTCCACGCAGGCTGTGCAGGGATATATATCCACACACAGGATGCATGGACTGGTAGGACCTTCAAGTGCTGCAGTCCAGTACATTAATATATTCAtggatatatttatatataagtaGTAACATCAACCACCTCAAATATATAAGGCACTATGGCTGGGGACAAGTATACGATGCAGCGAGTCTCGTGACGCCAACAACAAGAGCGACGTCTAACGCATCAACTTCCTGTTTACATTTTGATCTGCTCATGCAAGATCACATGCAGCTTGAGGAGCAACAACCCTACTTTAAATCGGTTAAGTGACTCCACATTTTTAAAACACCAAAGACACTGAGAAAAGGTAGAAATACTTCAGACGCGGTACGACACACACCGTGGACAACATGTGCACCTGTCGGCCTATCGAGCTAGAGACGGGGATGGCTTTACAAATGTGGATGTGTCTTGCACACGTTCAGAAGGCAATATAGAAAAATAGCTGGGATAAGGTCTGACCTAGCAACGCCACCCGATTAGTCACCTGTTTTTTGAGGAGTATTGGTAGAAGAGCTAATGTGAAGGTATATTAAAATGTGCAAAACACAGAGAGTGAGTTACTTATCTACATTCAATCattccatccatccttccttgcCCCCCTTCCTCATCCTCCATTTCACCCTCCTCCACCCAAACtttgtgattttattttttatagctCATATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU628211 True 4415 lncRNA 0.39 2 85483671 85488118

Neighbor

gene id symbol gene type direction distance location
LOC110506914 NA coding upstream 180181 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 209731 85221913 ~ 85273940 (+)
LOC118965050 NA coding upstream 262578 85217690 ~ 85221093 (+)
LOC110506925 LOC106591450 coding upstream 286030 85188254 ~ 85197641 (+)
LOC118965049 NA coding upstream 299347 85183179 ~ 85184324 (+)
cstf3 cstf3 coding downstream 89994 85578112 ~ 85596032 (+)
wt1b LOC106587831 coding downstream 209305 85697423 ~ 85718907 (+)
LOC110526726 pax6 coding downstream 293673 85781791 ~ 85806164 (+)
LOC110526731 LOC107719794 coding downstream 446560 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 581170 86069288 ~ 86069806 (+)
G554507 NA non-coding upstream 5141 85478292 ~ 85478530 (+)
G554504 NA non-coding upstream 10531 85472820 ~ 85473140 (+)
G554501 NA non-coding upstream 13085 85470341 ~ 85470586 (+)
G554500 NA non-coding upstream 14175 85468962 ~ 85469496 (+)
G554496 NA non-coding upstream 18959 85464433 ~ 85464712 (+)
G554492 LOC106562738 non-coding downstream 2475 85490593 ~ 85490846 (+)
G554512 NA non-coding downstream 6041 85494159 ~ 85494527 (+)
G554513 NA non-coding downstream 6565 85494683 ~ 85495142 (+)
G554514 NA non-coding downstream 8169 85496287 ~ 85496597 (+)
G554515 NA non-coding downstream 9702 85497820 ~ 85498833 (+)
G554423 NA other upstream 258507 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 376685 85104148 ~ 85107300 (+)
G554363 NA other upstream 394144 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 403335 85079852 ~ 85080336 (+)
LOC110526993 LOC106562571 other upstream 512121 84819145 ~ 84971574 (+)
G554907 NA other downstream 324527 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 683566 86171652 ~ 86291885 (+)
G555192 NA other downstream 803960 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 862828 86350925 ~ 86353193 (+)

Expression


Co-expression Network