G554492 (LOC106562738)


Basic Information

Item Value
gene id G554492
gene name LOC106562738
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85490593 ~ 85490846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU628212
GTGTTGCCTAGCGTCTCGTTGATGTGTGGGTGGGGGTTGTTATTCTGCACCCTCATGGGCGGCACCACCATGGTGCGCACCGCCGGCTTTCTGGGCTCCGTTACCGGGGCGATGCACGCTACACGGGGCCCGCGGTTCTGGTTGCCATCGGCGATGTAGCGTTGTTCGGTGAAGGGGCTGTTGCTAGGGCCAGAGGAGTCGGAGGAAGGCGAGCCGTCCACAATGTCACAACCGCTCTCCTGCTCGTCATCTGA

Function

NR:

description
homeodomain-interacting protein kinase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU628212 True 254 lncRNA 0.63 1 85490593 85490846

Neighbor

gene id symbol gene type direction distance location
LOC110506914 NA coding upstream 187103 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 216653 85221913 ~ 85273940 (+)
LOC118965050 NA coding upstream 269500 85217690 ~ 85221093 (+)
LOC110506925 LOC106591450 coding upstream 292952 85188254 ~ 85197641 (+)
LOC118965049 NA coding upstream 306269 85183179 ~ 85184324 (+)
cstf3 cstf3 coding downstream 87266 85578112 ~ 85596032 (+)
wt1b LOC106587831 coding downstream 206577 85697423 ~ 85718907 (+)
LOC110526726 pax6 coding downstream 290945 85781791 ~ 85806164 (+)
LOC110526731 LOC107719794 coding downstream 443832 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 578442 86069288 ~ 86069806 (+)
G554491 NA non-coding upstream 2475 85483671 ~ 85488118 (+)
G554507 NA non-coding upstream 12063 85478292 ~ 85478530 (+)
G554504 NA non-coding upstream 17453 85472820 ~ 85473140 (+)
G554501 NA non-coding upstream 20007 85470341 ~ 85470586 (+)
G554500 NA non-coding upstream 21097 85468962 ~ 85469496 (+)
G554512 NA non-coding downstream 3313 85494159 ~ 85494527 (+)
G554513 NA non-coding downstream 3837 85494683 ~ 85495142 (+)
G554514 NA non-coding downstream 5441 85496287 ~ 85496597 (+)
G554515 NA non-coding downstream 6974 85497820 ~ 85498833 (+)
G554516 NA non-coding downstream 9321 85500167 ~ 85500740 (+)
G554423 NA other upstream 265429 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 383607 85104148 ~ 85107300 (+)
G554363 NA other upstream 401066 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 410257 85079852 ~ 85080336 (+)
LOC110526993 LOC106562571 other upstream 519043 84819145 ~ 84971574 (+)
G554907 NA other downstream 321799 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 680838 86171652 ~ 86291885 (+)
G555192 NA other downstream 801232 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 860100 86350925 ~ 86353193 (+)

Expression


Co-expression Network