G554998


Basic Information

Item Value
gene id G554998
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85803840 ~ 85804712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU628862
GAGACTAATTGTACCTGACCTAAAGAAATGTATTTTTATGATGCATGAAAATGTGTAGAAAACATTTATAGAATATTCTTGGGgggataaaaatgtaaatgtacttttattGTAGAAATCTTTTGATTTCTAGGGAAGACATACTTACAATTTGACATGAACAAATTGGATTATATCGAAGACACAGTCTACCATTTAGCGATTCAACTGTTTTACTCCACAGCTCCTCTGCATCTATAGCTCTTCACTTGGACCGTTAATCAATCCATCCACCACAGCAGAGGTCCATGAACAAGTCTTGAACCTAGAATCAATCCATCCACCACAGCAGAAGTCCATGAACAAGTCTTGAATGTCCCACTGTCCTTGCAAACTGTTAATGGTGGTTGTCTGTACAATTCCTGTGATAATGTGGTCGTCTGTGACCACAGTGAAATATCCAGGCCTATACAGTTTGTGTGATATTGCAGGAGTCAAAGACCCAAGGCTGAGGTGGGTGGATTGACTGGAGGTCCTCCTCTGCTGACGTCCATTTTGAAGGAGTATGACCAATAAATAGGTTTAATAAACACACTGAGTCTATTCCCCACAGCTCTCCTCTCGGGTGATATGCAACAGTTTCGCATGAGTCCACAGACCGTGCAAAGTCTGGTAGAAAGTCTCGATGTAAGCAGATAAAAAAATAGTAATGGCAGAAATCTCTTGGGTTCTCCTTTACCTCAAAAACAAACACAAGACCAACATGGTTTTCTAGCAGTCCATCTATCAGTACTTGATCTGGGTTTTTCATCATAACATACACACGGCCATATACAAACACAag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU628862 True 823 lncRNA 0.40 2 85803840 85804712
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506939 LOC106596505 coding downstream 47512 85741675 ~ 85779604 (-)
eif3m csn7 coding downstream 123730 85673680 ~ 85680110 (-)
LOC110506935 LOC106562570 coding downstream 134055 85664502 ~ 85669785 (-)
LOC118936664 LOC106562605 coding downstream 139549 85642286 ~ 85664291 (-)
LOC110506192 LOC106593648 coding downstream 160383 85604261 ~ 85643457 (-)
elp4 elp4 coding upstream 7388 85812100 ~ 85935007 (-)
LOC118964954 NA coding upstream 537186 86341898 ~ 86346739 (-)
LOC118964956 rabp1 coding upstream 607880 86412450 ~ 86424523 (-)
LOC110526738 LOC106587653 coding upstream 622820 86427532 ~ 86432060 (-)
LOC110526741 NA coding upstream 634903 86439615 ~ 86447991 (-)
G554877 NA non-coding downstream 70085 85733109 ~ 85733755 (-)
G554870 NA non-coding downstream 84945 85717557 ~ 85718895 (-)
G554868 NA non-coding downstream 88725 85714859 ~ 85715115 (-)
G554837 NA non-coding downstream 112453 85690997 ~ 85691387 (-)
G555053 NA non-coding upstream 102436 85907148 ~ 85907423 (-)
G555074 LOC106562586 non-coding upstream 143911 85948623 ~ 85957231 (-)
G555085 NA non-coding upstream 161405 85966117 ~ 85967044 (-)
G555108 NA non-coding upstream 186641 85991353 ~ 85992058 (-)
G554819 NA other downstream 171153 85630576 ~ 85632687 (-)
G554679 NA other downstream 486726 85240999 ~ 85317114 (-)
G555590 LOC106587652 other upstream 588035 86392747 ~ 86393060 (-)
G555606 NA other upstream 630229 86434941 ~ 86437902 (-)
G555617 NA other upstream 650412 86455124 ~ 86457965 (-)
LOC110506946 LOC106562772 other upstream 1653265 87456447 ~ 87498104 (-)

Expression

G554998 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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G554998 Expression in each Bioproject

Bar chart with 6 bars.
G554998 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network