G554907


Basic Information

Item Value
gene id G554907
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85812645 ~ 85814303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU628722
GGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGAAAGGTGTATCTTGTGTTTCATTACAGATATCCCGTTGAAATGATtcccccaccttctctctctctctgagacaggcCCAGTCACAACAAGATGACAGAGTTACATAGAGGGGCTTGGATGGCGTGTCGCTGCCTCCTTACTTCAATACAGGTATTGTAAGTCGCTCTAGACAATAGCATTTACTAAAATATCAAATGTCAAAGTGTCctaggaaaggaaggaaggaggctGCTAGGCCACTTGGACAGTTGAAGGGAAAAGATTGGCGGGTGAAAACAGTTGGCAGGGAAACAGTTGACAATGTGACAGTGGTGTAACAGTCTGCAGAGTAACCATGGGTAATGGGTTGCCATGGCGAAAGAGTCCCAGCAGTTCTAGAAGTCCAGATGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGGTGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTCTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGCGATGATGGTGAGTGGGGTTCTAGAAGTCCAGATGTCTGTTGCCAGTGGAGCCGGAGCCACAGCCTGAGGAGCCCACCATGGCTGTCCCTGTCAGCTCTCCCCGGCTCACACGACTCACTGTCTCTGACAGGTCTGGAGGCAGATGTAGT
>TU628725
GGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGAAAGGTGTATCTTGTGTTTCATTACAGATATCCCGTTGAAATGATtcccccaccttctctctctctctgagacaggcCCAGTCACAACAAGATGACAGAGTTACATAGAGGGGCTTGGATGGCGTGTCGCTGCCTCCTTACTTCAATACAGGTATTGTAAGTCGCTCTAGACAATAGCATTTACTAAAATATCAAATGTCAAAGTGTCctaggaaaggaaggaaggaggctGCTAGGCCACTTGGACAGTTGAAGGGAAAAGATTGGCGGGTGAAAACAGTTGGCAGGGAAACAGTTGACAATGTGACAGTGGTGTAACAGTCTGCAGAGTAACCATGGGTAATGGGTTGCCATGGCGAAAGAGTCCCAGCAGTTCTAGAAGTCCAGATGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGCGATGATGGTGAGTGGGGTTCTAGAAGTCCAGATGTCTGTTGCCAGTGGAGCCGGAGCCACAGCCTGAGGAGCCCACCATGGCTGTCCCTGTCAGCTCTCCCCGGCTCACACGACTCACTGTCTCTGACAGGTCTGGAGGCAGATGTAGT
>TU628731
GGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGAAAGGTGTATCTTGTGTTTCATTACAGATATCCCGTTGAAATGATtcccccaccttctctctctctctgagacaggcCCAGTCACAACAAGATGACAGAGTTACATAGAGGGGCTTGGATGGCGTGTCGCTGCCTCCTTACTTCAATACAGGTATTGTAAGTCGCTCTAGACAATAGCATTTACTAAAATATCAAATGTCAAAGTGTCctaggaaaggaaggaaggaggctGCTAGGCCACTTGGACAGTTGAAGGGAAAAGATTGGCGGGTGAAAACAGTTGGCAGGGAAACAGTTGACAATGTGACAGTGGTGTAACAGTCTGCAGAGTAACCATGGGTAATGGGTTGCCATGGCGAAAGAGTCCCAGCAGTTCTAGAAGTCCAGATGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGATGTTTGTTGCCAGCGGCGATGATGGTGAGTGGGGTTCTAGAAGTCCAGATGTCTGTTGCCAGTGGAGCCGGAGCCACAGCCTGAGGAGCCCACCATGGCTGTCCCTGTCAGCTCTCCCCGGCTCACACGACTCACTGTCTCTGACAGGTCTGGAGGCAGATGTAGT
>TU628732
GGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGAAAGGTGTATCTTGTGTTTCATTACAGATATCCCGTTGAAATGATtcccccaccttctctctctctctgagacaggcCCAGTCACAACAAGATGACAGAGTTACATAGAGGGGCTTGGATGGCGTGTCGCTGCCTCCTTACTTCAATACAGGTATTGTAAGTCGCTCTAGACAATAGCATTTACTAAAATATCAAATGTCAAAGTGTCctaggaaaggaaggaaggaggctGCTAGGCCACTTGGACAGTTGAAGGGAAAAGATTGGCGGGTGAAAACAGTTGGCAGGGAAACAGTTGACAATGTGACAGTGGTGTAACAGTCTGCAGAGTAACCATGGGTAATGGGTTGCCATGGCGAAAGAGTCCCAGCAGTTCTAGAAGTCCAGATGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGGTGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGCGATGATGGTGAGTGGGGTTCTAGAAGTCCAGATGTCTGTTGCCAGTGGAGCCGGAGCCACAGCCTGAGGAGCCCACCATGGCTGTCCCTGTCAGCTCTCCCCGGCTCACACGACTCACTGTCTCTGACAGGTCTGGAGGCAGATGTAGT
>TU628723
AGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGGATGGTGAAATAGCAGAAAGGTGTATCTTGTGTTTCATTACAGATATCCCGTTGAAATGATtcccccaccttctctctctctctgagacaggcCCAGTCACAACAAGATGACAGAGTTACATAGAGGGGCTTGGATGGCGTGTCGCTGCCTCCTTACTTCAATACAGGTATTGTAAGTCGCTCTAGACAATAGCATTTACTAAAATATCAAATGTCAAAGTGTCctaggaaaggaaggaaggaggctGCTAGGCCACTTGGACAGTTGAAGGGAAAAGATTGGCGGGTGAAAACAGTTGGCAGGGAAACAGTTGACAATGTGACAGTGGTGTAACAGTCTGCAGAGTAACCATGGGTAATGGGTTGCCATGGCGAAAGAGTCCCAGCAGTTCTAGAAGTCCAGATGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTTGTTGCCAGCTGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGGTGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTATAAGTCCAGGTGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGGTGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTGGAAATCCAGATGTTGGTTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGCTGCCAGCGGTGATAATGGTGAGGGGGTTCTAGAAGTCCAGATGTTTGTTGCCAGCGGCGATGATGGTGAGTGGGGTTCTAGAAGTCCAGATGTCTGTTGCCAGTGGAGCCGGAGCCACAGCCTGAGGAGCCCACCATGGCTGTCCCTGTCAGCTCTCCCCGGCTCACACGACTCACTGTCTCTGACAGGTCTGGAGGCAGATGTAGT

Function

NR:

description
complement C3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU628722 False 1514 TUCP 0.50 3 85812645 85814303
TU628725 False 984 TUCP 0.50 2 85812645 85814303
TU628731 False 840 lncRNA 0.49 2 85812645 85814303
TU628732 False 1177 TUCP 0.50 4 85812645 85814303
TU628723 True 1442 TUCP 0.50 3 85812669 85814303

Neighbor

gene id symbol gene type direction distance location
LOC110526726 pax6 coding upstream 6481 85781791 ~ 85806164 (+)
wt1b LOC106587831 coding upstream 93738 85697423 ~ 85718907 (+)
cstf3 cstf3 coding upstream 216613 85578112 ~ 85596032 (+)
LOC110506914 NA coding upstream 509155 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 538705 85221913 ~ 85273940 (+)
LOC110526731 LOC107719794 coding downstream 120375 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 254985 86069288 ~ 86069806 (+)
LOC118964953 LOC106594589 coding downstream 357349 86171652 ~ 86291885 (+)
LOC118965051 NA coding downstream 507941 86322244 ~ 86323503 (+)
LOC110526100 LOC106593965 coding downstream 532178 86346481 ~ 86349061 (+)
G554906 NA non-coding upstream 109 85812105 ~ 85812536 (+)
G554892 NA non-coding upstream 59874 85752513 ~ 85752771 (+)
G554889 NA non-coding upstream 66350 85745945 ~ 85746295 (+)
G554884 NA non-coding upstream 72857 85739562 ~ 85739788 (+)
G554878 NA non-coding upstream 76874 85735554 ~ 85735771 (+)
G554924 NA non-coding downstream 30773 85845076 ~ 85849044 (+)
G554939 NA non-coding downstream 62273 85876576 ~ 85885358 (+)
G554940 NA non-coding downstream 67608 85881911 ~ 85884694 (+)
G554954 NA non-coding downstream 98004 85912307 ~ 85912889 (+)
G554955 NA non-coding downstream 100528 85914831 ~ 85915420 (+)
G554423 NA other upstream 587481 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 705659 85104148 ~ 85107300 (+)
G554363 NA other upstream 723118 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 732309 85079852 ~ 85080336 (+)
G555192 NA other downstream 477775 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 536643 86350925 ~ 86353193 (+)
G555405 LOC106587654 other downstream 635541 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 727048 86534461 ~ 86544504 (+)

Expression


Co-expression Network