G555192


Basic Information

Item Value
gene id G555192
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86292078 ~ 86293881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU629095
ttgatcacctaccaaccagtaagaattccggctctcacagacctgttagtttttctttaagaatccctcctgttctccactcattacctgtgttaactgcacctgtttgaacttgttacctgtataaaagacacctgttcacacactcaatcaaacagactccaaccgctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggaaaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtgaggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacagcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattgcgagatcttggccaacaacctccttccctcagtaagagaaTTGAAGATgtgtcgtggctgggtcttccagcataacaacgacccgaaacacacagccagggcaactaatgagtggctccgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaatatttggagggagctgaaagtccgtattgcccagtgacagccccgaaacctaaaggatctggagaaggtctgcatggaggagtgggccaaaatccctgctgcaatgtgtacaaacctggtcaagaactacaggaaacggatgatatctgtaattgcaaacaaaggtttctgtactaaatattaagttctgcttttctgatgtatcaaatacttatgtaatgcaataaaatgcgaattaatacaatgtgattttctggatttttgttttagattccttctctcgcagttgaagtgtacctatgataaaaattacagacctctacatgctttgtaagtaggaaaacctgctaaatcggcagtgtatcaaatacttgttctccccactgtgtatactgtattcatGTTGTAAAAGATCTGTACTAAAAGTTGTTGGTTGAAAACATCCTGGTGGGATTTTCTTTCTTGTGTCTTCGCCTGTATTTGATTTAGCTTGTTTCTTTGCCACTCCCATCAAATGTTCTTGAAACGTTTCTTTAATGTTCATGTCTTACTCCCACTGTTAGGGTCGAGCAGGGGGCTCCAACTCCTCCGGTCTCTGAGTGCTTCTGGGGGTGGAAGCTTGTGTTCCAGTCCAG
>TU629096
ttgatcacctaccaaccagtaagaattccggctctcacagacctgttagtttttctttaagaatccctcctgttctccactcattacctgtgttaactgcacctgtttgaacttgttacctgtataaaagacacctgttcacacactcaatcaaacagactccaaccgctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggaaaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtgaggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacagcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattgcgagatcttggccaacaacctccttccctcagtaagagaaTTGAAGATgtgtcgtggctgggtcttccagcataacaacgacccgaaacacacagccagggcaactaatgagtggctccgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaatatttggagggagctgaaagtccgtattgcccagtgacagccccgaaacctaaaggatctggagaaggtctgcatggaggagtgggccaaaatccctgctgcaatgtgtacaaacctggtcaagaactacaggaaacggatgatatctgtaattgcaaacaaaggtttctgtactaaatattaagttctgcttttctgatgtatcaaatacttatgtaatgcaataaaatgcgaattaatacaatgtgattttctggatttttgttttagattccttctctcgcagttgaagt
>TU629094
GGTAGAAGTTCATGGATGAGAGAGAAAATGTTTTGAGTTTAAGACTCAATTCACTATCCGACAGGCGGTGGTTGGTTTTCTTTTACGACACACCTGCCTAAAAAAGGTTTAGTTGTCCTCTCGATTGTaaatctgatagtatttctgtttttatagcTTTCTTTCTTATTTTGCACTGTGTGTAAATGCAATCTTGCTAGCACAAAAAAATGTTGCCAAAAGCGGTCTCAACTTTGCAACTGTAAATGCTCCTTTACACCCTGTTTCTCTAGCAattctctcttctgtttctctggCTGTTAGTTTCCTCCTTGTTGGTCTGCTCTCTTTCTTTCAGTTCCTTGTGATATATTTAGCTGCTTTTATATGCAAATAAAATTGCAAGATTTTTACTTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU629095 False 1302 TUCP 0.45 1 86292078 86293379
TU629096 False 960 TUCP 0.46 1 86292078 86293037
TU629094 True 396 lncRNA 0.36 1 86293486 86293881

Neighbor

gene id symbol gene type direction distance location
LOC118964953 LOC106594589 coding upstream 1601 86171652 ~ 86291885 (+)
LOC118965088 NA coding upstream 223680 86069288 ~ 86069806 (+)
LOC110526731 LOC107719794 coding upstream 336305 85934678 ~ 85957181 (+)
LOC110526726 pax6 coding upstream 487322 85781791 ~ 85806164 (+)
wt1b LOC106587831 coding upstream 574579 85697423 ~ 85718907 (+)
LOC118965051 NA coding downstream 28363 86322244 ~ 86323503 (+)
LOC110526100 LOC106593965 coding downstream 52600 86346481 ~ 86349061 (+)
LOC118964955 LOC106592958 coding downstream 57044 86350925 ~ 86353193 (+)
LOC110526102 LOC106587651 coding downstream 59957 86353838 ~ 86366007 (+)
LOC110526995 LOC106587650 coding downstream 72264 86366145 ~ 86383561 (+)
G555256 NA non-coding upstream 33936 86259226 ~ 86259550 (+)
G555253 NA non-coding upstream 38597 86254593 ~ 86254889 (+)
G555252 NA non-coding upstream 43889 86249379 ~ 86249597 (+)
G555251 NA non-coding upstream 45381 86247742 ~ 86248105 (+)
G555324 NA non-coding downstream 2356 86296237 ~ 86296550 (+)
G555327 NA non-coding downstream 15097 86308978 ~ 86309249 (+)
G555334 NA non-coding downstream 26897 86320778 ~ 86321100 (+)
G555344 NA non-coding downstream 49717 86343598 ~ 86344331 (+)
LOC110526916 LOC106587652 non-coding downstream 115740 86389359 ~ 86412050 (+)
G555192 NA other upstream 107 86292078 ~ 86293881 (+)
G554907 NA other upstream 479183 85812645 ~ 85814303 (+)
G554423 NA other upstream 1068322 85224762 ~ 85225164 (+)
G555405 LOC106587654 other downstream 155963 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 247470 86534461 ~ 86544504 (+)
G555456 NA other downstream 275192 86569073 ~ 86570234 (+)
G556150 LOC106562774 other downstream 1002637 87296518 ~ 87296986 (+)
LOC110506910 snrpa1 other upstream 1185092 85104148 ~ 85107300 (+)

Expression

G555192 Expression in all Baseline Samples

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G555192 Expression in each Bioproject

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G555192 Expression in each Sample
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Co-expression Network