G555653


Basic Information

Item Value
gene id G555653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86525726 ~ 86526921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU629646
TGCATTCACTTTGTTTAATTCATAAAATGGGAACAGTTGTACATCTCATGTTCAGCAGATACAGAGACAAACTTATTCTAAACTGCAAACTTAAATTTCTCCATCCACCAAATCCTGCTAAACCATTAAAAAAAATGGCTTCCAAAAGCAACCCCTTCATGTTTGTAGTCCAGTTTCACATTCTGAATAATCAACATTTTACAGCAATCAATTTCTTAGCAGTCCAAATGGCACATGGGCCACTGTTAGAATTCTTCAATATTTCAGTAGACCCTCAAACAAATACAattgcacttttttttttaagtacttaCAGGATTATAGATCAAAACACCAAAACACAAAATACTCCTAAACAAACACACGTTCATTATTTAGTAGCACAAAATGCATAAATATACATTAAACAGAAGTACAAAAATACTTGTACTTTGCATTTGCTCAAATATACTCTTTATAGACATTGATATTTTGGGAGAGACTGGGATTGTCAGAACCTAGGGGTGCATTCTACAAGGTCCATGCAAGAGGAGCCATCTACACAACAGTCCATCTTTCACAGGTAAGACCAGGAATACACAGGAAGCAAAGGGGATTCATTGTCTAGACTTTAGGTCCAGATAAAGAAGCAACACAATCACTAAGAAAAACAAGGACACAGAACTCTGCTTTCTAATTCATGCCAAAAATACTTCAACATGCAATGACTGAACTCTTAGCTCTCTAGGCCATAACCCAAGGAGTTGCTTTATAATGTATAACTTCTTCAGAATGTTATTCTCTTCAGGTCATTATTTGCTATGGCGTTTACTTGGCTCACGTGAGGTTTGGAAGTGCTAAGATGGTACCGGAATAGTTGCCAAAAGGAAATCAGCTCAATCTGTCGATGGCAAGGTTGTCAGTTCAGACCCCTCCAGAGAACATGAATAGGTCTGTAATGCACATTTGTCCATTAAATAAACCTGATTAAATTAATGACGAGCTCAGTTAAACCTCCCTTCAACTGGACGGAGAAGGTATGGTTCCCAAAATACATtatatctaacagaactgCCGGGACTTCCATCCTGGCTGGTTAGTTTCAGATGGAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU629646 True 1091 lncRNA 0.37 2 86525726 86526921
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526741 NA coding downstream 77735 86439615 ~ 86447991 (-)
LOC110526738 LOC106587653 coding downstream 93666 86427532 ~ 86432060 (-)
LOC118964956 rabp1 coding downstream 101203 86412450 ~ 86424523 (-)
LOC118964954 NA coding downstream 178987 86341898 ~ 86346739 (-)
elp4 elp4 coding downstream 590719 85812100 ~ 85935007 (-)
LOC110526766 LOC106562456 coding upstream 23345 86550266 ~ 86555102 (-)
LOC118965097 NA coding upstream 25643 86552564 ~ 86552691 (-)
LOC110506207 LOC106562785 coding upstream 29902 86556823 ~ 86602398 (-)
LOC110506964 LOC106562409 coding upstream 75746 86602667 ~ 86612241 (-)
LOC110506206 neo1 coding upstream 87869 86614790 ~ 86829756 (-)
G555654 LOC107730279 non-coding downstream 3152 86520346 ~ 86522574 (-)
G555643 NA non-coding downstream 30507 86494926 ~ 86495219 (-)
G555642 NA non-coding downstream 34985 86490392 ~ 86490741 (-)
G555638 NA non-coding downstream 39020 86485674 ~ 86486706 (-)
G555637 NA non-coding downstream 40145 86484915 ~ 86485581 (-)
G555656 NA non-coding upstream 862 86527783 ~ 86528148 (-)
G555658 NA non-coding upstream 5349 86532270 ~ 86532515 (-)
G555671 NA non-coding upstream 70602 86597523 ~ 86597852 (-)
G555672 NA non-coding upstream 71710 86598631 ~ 86598884 (-)
G555617 NA other downstream 67761 86455124 ~ 86457965 (-)
G555606 NA other downstream 87824 86434941 ~ 86437902 (-)
G555590 LOC106587652 other downstream 132666 86392747 ~ 86393060 (-)
LOC110506939 LOC106596505 other downstream 769377 85741675 ~ 85779604 (-)
LOC110506946 LOC106562772 other upstream 931056 87456447 ~ 87498104 (-)
LOC110513865 LOC106562791 other upstream 1019668 87546236 ~ 87693072 (-)
LOC110526751 LOC106562707 other upstream 1246326 87773201 ~ 87860425 (-)
G557663 NA other upstream 2632303 89159224 ~ 89159885 (-)
G558051 NA other upstream 3094427 89621348 ~ 89621755 (-)

Expression

G555653 Expression in all Baseline Samples

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G555653 Expression in each Bioproject

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G555653 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network