G557012 (LOC106562560)


Basic Information

Item Value
gene id G557012
gene name LOC106562560
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88227673 ~ 88230856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU631304
GGTGGTGGAGGGAAATGGTTTAACACTGGAATGTTCACCATGTACACCAGATTCTTCAACTGGAATTGATGAAGCATCAAGATCTGGCTTCTCAGTCATGTCAGGTGTACTTTTCTCTACCGACAACTCTTCCTGaattgtcttcttcttcttcttcttcttctttgacaGATTCATTCCCTGCAATTGTTCAGTTGTATCCGTTGGTGGGACTGGACTTCGTAGGGACACATCTAATTTCCTTAGCTTTTCTTTCAGGTCTTCATCCATCTCCATTTCAGCAGTAACAAGTATTTTCTCCGGCACAGAGGTTATCCCTTGTGATGTGATAATCGCAGGTACACAATCAAAGGTGTACAGATCTGCAAGCAAACCAAATGTAAAGACACCTAAGCTGGAGGTCTGAGGATTGGCAAGATATGCTTGATCAGTGAATGAGATGATCCTCTTGCATAACTCCTCAACAAAAGGGAGGGTCCAGCCATGTTTGTGATTTGGAGCTTTCTGAGTAATCACATACAGTAGTCTGACAACTGAAATGTTGCGATTTAGTCCTTGAGGGGTACTTTTGGATTCATGTGTGAGGTATTTCAGAAGAGTGGGTATTACTACCAGTGACAGTCCAAGAGATATTTCTTTCATAATGTTAAAAACGGCTGTCAAGCAATTCACTACCATATCTTGTAAATGTTTGGGAATTTTAGGCAAACGATTGGTTGCCTCCTCAATGTAGAGATCAATTTTCTGAGATTCTCTCAGCCACTTTATGGATGCTTGACGATACTGATCCGCATTTTGTCCAAAGGCGTTAAAAGACATGTCATATAGTGTGAGATGATTCACAGGGTTCACCACCAGCATGTGTTTGCCATATTCATTGAAAACATCCTCCACTGATTTGAGTCCTATTGCACAAGAAAAATCATAAAAAATCTTCAATTTGACAAAATTCTCACTCTCTGAGGAGAATTTCTGAATCATGCTTGCTATCTTTTGGTCAGTAGCGGGATATGCTTTGAGATTTCTTTCAGCAAATGCTCCAGACATCATCAACTCTTTCACAATGTCTTCTCTGTCATTGTTAGCCGCCAATTGAAGTGGAGTAAAGTTCTGGATTGGTGCCCCTTCTGGATCTGCTTTTGCTGCGATTAATCTACTCACTAAACTGACAGGAGCTTTTGACATTGCGGCATAATGCAAAGGAACCCAACCATTTGCTGATTGGATGTTGGGGTCAGCACCTTCTTTCAGAAGAAATTTACAAATATTGTCATTTGTAAATGCAACAGCAGCAATTAAAGGGGTAACATCATCCTTCAACTTAGTACAAGGGTACAGTCTATTCAAGTCCTTGCCGCCTCTAATCAATTTCTTCAGCTCCTTCAACTTCCTGTCAATAATGCACTTTATAATGGGATCTGTTTGCCTTTGCACCCCATGCACCGTCTGTACAAATTGGATCTGGATTTGACCTGGGACGATATTCATTCTTCAAACATCTGCTTCTACAGGTACAGTAGATCTGTGGGATGACATCTCTATTATTACCTCTGTTAAAAGaattaagcaataaggcacaagagGCTGTGATTTTGTAAATAATTTAGTAAGTTGACAAATATAGACTGTATACATTATGTCTGGTAAAATCGCatggaaaacattttatttaattacaTGCTTACTTAATACACTTGTTAATCAGGTGTGAAGTCGCAGTAGAAATGAAAATCAAGTATGACTGAGAAAAAACTAATGAGCAGCAAATTAACAgtattttgtttattgttttagtTTAAAAAAAGCTGAATGTTTGTTATAAACTATTTTAAAGGCAGACTCTACCACACAACCAAAACCTAttagtgaagatgctggaggcaaAATGTTAAACTTGAAAATCTTTGCACACCACCAGCCAGATCAAAATGTATTgcttatgtaacggatgtgaaatggctagcatagttagcggtggtgcgcgctaatagcgtttcaatatgtggacgtcacttgctctgagaccttgtaGTGGTTCCcattgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgtgggtgggagttgttgatgtgtgcagagggtccctggttcgagcccgggtatgggcgaggggacggactaaagttatactgttacacttagCTACTATTAAAATTTTAAAAAGTGAGGGGAGACTTTAATTTTTTTCCCTGTTAAACTATTTAAAAAGGCACTACTTTCCAATGTCTACGTGTTGTGGCTTGTTTTGCCAGTCCTTCTAAGTGCTGAAGTAGGCCACTCCTTATGACCGAAATACCATTGCTCATTTAAACATGACATTAAAATAAAAGCACATTACATACAACTAAATGTGGTGACGTTAACTTTCAAATATAAATTGTTCATGTCCGTAATAAGTAATTTGAGATTATTGTTCGATTTAGCCTCTCACTATACAGGTGAAATTGTTCTTATTCTTTAAATAAATTCTAGACACTCCTGACACAATATCAGGAGAGGTTTTTGAcataacacacaatacacaacatcCTAAAATATTTGATTTGTTCTAGGTTGCAATATCGTTTGATAATAATGTGTTTTATGGCAATTACGCTCTCTATACCGTGACTTTGATGAGCAATACTTACCTTCTAATGAAATGACAGAATCATCTAACAAGAAGAGGAATATGATATCATATTCAGCGTTAGAAATGTAAATGATAGTTAAGAAAGGTTACTTACATTTCCTTATCGTGAAATCGTCACCAGCTTGCTTGAGGAAGTGTCTACTGAAGTTAAAAAAACAACCAGCTGATTAGGTGACTGTGTTGAAGTAAATGAAACTCTGACGGCTATTTAGACTATGATAGTCTAACGTGAAGAGTATGATCTTCTAATGAGCATTATTAATGTAAATGATAGCTATTACTTACATTTTGTCATCGTGATATCGGCACCAGCTTGTTTGAGGAAGTGTCCACAGACTATTGAAAAACTCAACCACACCTCTTTATCAGGTGAATGTGTTTCAGGAAAATGAAACTGAAACTTTTAAGAAGAATAGTAATATGCCTGCCTGGTTCCTTCTTTCTCACAAATATTTCACCTACTATGATTTTCATACTTAAATGAAATAC

Function

NR:

description
uncharacterized protein LOC109879923 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU631304 True 3162 lncRNA 0.38 2 88227673 88230856

Neighbor

gene id symbol gene type direction distance location
LOC110513137 LOC106562701 coding downstream 230785 87991498 ~ 87996888 (-)
LOC110526751 LOC106562707 coding downstream 367248 87773201 ~ 87860425 (-)
LOC110526757 LOC106562769 coding downstream 507915 87711280 ~ 87719758 (-)
LOC110526758 call4 coding downstream 516909 87702276 ~ 87710764 (-)
LOC110513865 LOC106562791 coding downstream 534601 87546236 ~ 87693072 (-)
LOC110517398 tle3 coding upstream 254601 88485457 ~ 88531275 (-)
uacab LOC106587861 coding upstream 467657 88698513 ~ 88784021 (-)
LOC110527001 mo4l1 coding upstream 570822 88801678 ~ 88815746 (-)
LOC110526783 LOC106562667 coding upstream 586215 88817071 ~ 88819232 (-)
LOC118936482 LOC105013624 coding upstream 597841 88828697 ~ 88951131 (-)
G556993 LOC106595677 non-coding downstream 61729 88164818 ~ 88165944 (-)
G556983 LOC106593271 non-coding downstream 79105 88146156 ~ 88148568 (-)
G556940 glce non-coding downstream 101874 88121017 ~ 88125799 (-)
G556968 NA non-coding downstream 112519 88114952 ~ 88115154 (-)
G556966 NA non-coding downstream 115565 88111872 ~ 88112108 (-)
G557015 LOC106562560 non-coding upstream 3165 88234021 ~ 88234915 (-)
G557028 NA non-coding upstream 18552 88249408 ~ 88249852 (-)
G557041 NA non-coding upstream 61356 88292212 ~ 88292448 (-)
G557044 NA non-coding upstream 63812 88294668 ~ 88294901 (-)
G557051 NA non-coding upstream 77136 88307992 ~ 88308367 (-)
LOC110506946 LOC106562772 other downstream 729581 87456447 ~ 87498104 (-)
G555617 NA other downstream 1769708 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 1780119 86439615 ~ 86447991 (-)
G557663 NA other upstream 928368 89159224 ~ 89159885 (-)
G558051 NA other upstream 1390492 89621348 ~ 89621755 (-)
G558124 NA other upstream 1489619 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 1635112 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 1743326 89974182 ~ 89981624 (-)

Expression


Co-expression Network