G557543


Basic Information

Item Value
gene id G557543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88955361 ~ 88956545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU631901
tatatatatatatatatatatatatatatatatgtgtggaGATGTGCAATGAGTTGtataatgtgatatttcataagTAACACGAATCCTAGCATTCTTGGGTTGTTTTACCACATTATGTATGTGTTTTTACATATATTTATTTGTGTTTTAAGTTAGTCGTTaatctgttctgtccatctgaaACATTAAACAATGTATATTATTGATGTAAAGCACTTTAAAAAATTGGCAACATTACTACTGATCTGGACCTCGCTGTACTAAGAAATAAAGTAAACTCTGTTAGGCATCTAATGTATAGAATACACTTCGTTCTAATGCAGCGTTTTCCAAATGCTGGACCAGGGGGATCCAAAGATGATGCACCTTTCTAGGTTTTTGTCCTAGccctaacacacctgattcaaatcaaaGGCTTGATGATGAATTGTTGATTAGTTGACTCAAGTGTGTGAGTGTTAGGACAAAAACACCGCTTTGGGTCACCGGGACCAGGAAAGGGAAACGCTGTTCTAATGGCGCCAACATTTATTCTAGCACTTATTTCGAAGTAACCAATGACCTTTCAACCTTGAACTAATTAAAAAGGTTCCGTTTGCCTAAAATGTCACACAACAGATTAGTCTTTTACAGTGTATAGAATGTTCATTCAGTCTCAACTATGATTGTTTTTAATCATACATAGATaccatgtacagtatattcattatAAAAGGTATATTTCTTCCGTATGATTTGAGCATTCGGTTACAAGACACACCCAGCTTCTGTTGTACTTAATAAAGGGTTTGAATCATCGTCAGAACCCTACCATACATTAAATAAACCACAGGCACAGAAACCAAACCtatttgttgtgtatttaatGATGTCTTGTAGGCTTTATTTTGTCATGTCAATCCTTTGTGCGTGGCAAGAGTTATGAGTGGGGATGAGATTAAAGGAAACCAAGACGCCACGTAAAGAGACTTGAAACGGCCATTTGTGACTGAATTCCATGTTGTGCAGTTGATTTCTGTAACcaatctttttttaaatcaattccAAGCCAGTTGGTTATTTTTTTCCACGATATATATATGACCTTTAAAAAGTGTTGTTGTGTCCCCATTAAGGGCCAATAAGACTCATGTATGTATTATATCAGAAATTAATGTAAAATACGATTAAAAAGTGAATCCT
>TU631902
TGAGTTGtataatgtgatatttcataagTAACACGAATCCTAGCATTCTTGGGTTGTTTTACCACATTATGTATGTGTTTTTACATATATTTATTTGTGTTTTAAGTTAGTCGTTaatctgttctgtccatctgaaACATTAAACAATGTATATTATTGATGTAAAGCACTTTAAAAAATTGGCAACATTACTACTGATCTGGACCTCGCTGTACTAAGAAATAAAGTAAACTCTGTTAGGCATCTAATGTATAGAATACACTTCGTTCTAATGCAGCGTTTTCCAAATGCTGGACCAGGGGGATCCAAAGATGATGCACCTTTCTAGGTTTTTGTCCTAGccctaacacacctgattcaaatcaaaGGCTTGATGATGAATTGTTGATTAGTTGACTCAAGTGTGTGAGTGTTAGGACAAAAACACCGCTTTGGGTCACCGGGACCAGGAAAGGGAAACGCTGTTCTAATGGCGCCAACATTTATTCTAGCACTTATTTCGAAGTAACCAATGACCTTTCAACCTTGAACTAATTAAAAAGGTTCCGTTTGCCTAAAATGTCACACAACAGATTAGTCTTTTACAGTGTATAGAATGTTCATTCAGTCTCAACTATGATTGTTTTTAATCATACATAGATaccatgtacagtatattcattatAAAAGGTATATTTCTTCCGTATGATTTGAGCATTCGGTTACAAGACACACCCAGCTTCTGTTGTACTTAATAAAGGGTTTGAATCATCGTCAGAACCCTACCATACATTAAATAAACCACAGGCACAGAAACCAAACCtatttgttgtgtatttaatGATGTCTTGTAGGCTTTATTTTGTCATGTCAATCCTTTGTGCGTGGCAAGAGTTATGAGTGGGGATGAGATTAAAGGAAACCAAGACGCCACGTAAAGAGACTTGAAACGGCCATTTGTGACTGAATTCCATGTTGTGCAGTTGATTTCTGTAACcaatctttttttaaatcaattccAAGCCAGTTGGTTATTTTTTTCCACGATATATATATGACCTTTAAAAAGTGTTGTTGTGTCCCCATTAAGGGCCAATAAGACTCATGTATGTATTATATCAGAAATTAATGTAAAATACGATTAAAAAGTGAATCCT
>TU631903
ACGAATCCTAGCATTCTTGGGTTGTTTTACCACATTATGTATGTGTTTTTACATATATTTATTTGTGTTTTAAGTTAGTCGTTaatctgttctgtccatctgaaACATTAAACAATGTATATTATTGATGTAAAGCACTTTAAAAAATTGGCAACATTACTACTGATCTGGACCTCGCTGTACTAAGAAATAAAGTAAACTCTGTTAGGCATCTAATGTATAGAATACACTTCGTTCTAATGCAGCGTTTTCCAAATGCTGGACCAGGGGGATCCAAAGATGATGCACCTTTCTAGGTTTTTGTCCTAGccctaacacacctgattcaaatcaaaGGCTTGATGATGAATTGTTGATTAGTTGACTCAAGTGTGTGAGTGTTAGGACAAAAACACCGCTTTGGGTCACCGGGACCAGGAAAGGGAAACGCTGTTCTAATGGCGCCAACATTTATTCTAGCACTTATTTCGAAGTAACCAATGACCTTTCAACCTTGAACTAATTAAAAAGGTTCCGTTTGCCTAAAATGTCACACAACAGATTAGTCTTTTACAGTGTATAGAATGTTCATTCAGTCTCAACTATGATTGTTTTTAATCATACATAGATaccatgtacagtatattcattatAAAAGGTATATTTCTTCCGTATGATTTGAGCATTCGGTTACAAGACACACCCAGCTTCTGTTGTACTTAATAAAGGGTTTGAATCATCGTCAGAACCCTACCATACATTAAATAAACCACAGGCACAGAAACCAAACCtatttgttgtgtatttaatGATGTCTTGTAGGCTTTATTTTGTCATGTCAATCCTTTGTGCGTGGCAAGAGTTATGAGTGGGGATGAGATTAAAGGAAACCAAGACGCCACGTAAAGAGACTTGAAACGGCCATTTGTGACTGAATTCCATGTTGTGCAGTTGATTTCTGTAACcaatctttttttaaatcaattccAAGCCAGTTGGTTATTTTTTTCCACGATATATATATGACCTTTAAAAAGTGTTGTTGTGTCCCCATTAAGGGCCAATAAGACTCATGTATGTATTATATCAGAAATTAATGTAAAATACGATTAAAAAGTGAATCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU631901 False 1185 lncRNA 0.34 1 88955361 88956545
TU631902 False 1136 lncRNA 0.35 1 88955361 88956496
TU631903 True 1104 lncRNA 0.36 1 88955361 88956464

Neighbor

gene id symbol gene type direction distance location
LOC118936482 LOC105013624 coding downstream 4230 88828697 ~ 88951131 (-)
LOC110526783 LOC106562667 coding downstream 136129 88817071 ~ 88819232 (-)
LOC110527001 mo4l1 coding downstream 139615 88801678 ~ 88815746 (-)
uacab LOC106587861 coding downstream 171340 88698513 ~ 88784021 (-)
LOC110517398 tle3 coding downstream 424086 88485457 ~ 88531275 (-)
LOC110506978 LOC106587757 coding upstream 45 88956590 ~ 88964509 (-)
LOC110526789 map2k5 coding upstream 18026 88974571 ~ 89111595 (-)
LOC110526791 LOC104927744 coding upstream 270996 89227541 ~ 89267492 (-)
LOC110509922 LOC106563534 coding upstream 360580 89317125 ~ 89346431 (-)
trnag-ucc NA coding upstream 438358 89394903 ~ 89394974 (-)
G557523 NA non-coding downstream 11762 88943341 ~ 88943599 (-)
G557518 NA non-coding downstream 18240 88924912 ~ 88937121 (-)
G557495 NA non-coding downstream 74164 88879891 ~ 88881197 (-)
G557488 NA non-coding downstream 83755 88871337 ~ 88871606 (-)
G557439 NA non-coding downstream 127883 88825740 ~ 88827478 (-)
G557591 NA non-coding upstream 13939 88970484 ~ 88971015 (-)
G557592 NA non-coding upstream 16330 88972875 ~ 88973694 (-)
G557598 NA non-coding upstream 28565 88985110 ~ 88985353 (-)
G557600 NA non-coding upstream 42778 88999323 ~ 88999534 (-)
G557601 NA non-coding upstream 61287 89017832 ~ 89018153 (-)
LOC110526751 LOC106562707 other downstream 1170009 87773201 ~ 87860425 (-)
LOC110513865 LOC106562791 other downstream 1403971 87546236 ~ 87693072 (-)
LOC110506946 LOC106562772 other downstream 1457269 87456447 ~ 87498104 (-)
G555617 NA other downstream 2497396 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 2507807 86439615 ~ 86447991 (-)
G557663 NA other upstream 202679 89159224 ~ 89159885 (-)
G558051 NA other upstream 664803 89621348 ~ 89621755 (-)
G558124 NA other upstream 763930 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 909423 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 1017637 89974182 ~ 89981624 (-)

Expression


Co-expression Network