G558339 (LOC106587697)


Basic Information

Item Value
gene id G558339
gene name LOC106587697
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 89974182 ~ 89981624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU632927
tttttttaccaGCCAGAATATTTTCCACAAAAATTACAACAAAACCAACAGATGagcatgctttgtaatgtttctaaaacaagtGTATTACTAGTAAGAAGTAAAATTGGTATATTAATTAAATTTTTAACCAAAATATCAGACAAAAATGTCCCACCTTTAAGGGAGGGAGGTTACCATGGCAACGCAAATCAGTATTGTTTCTGCCTGTGAGATTGACTAGTAGAAGCGTGGCCTTCTCTTCCCAAGCAGTTGAAACtcaaacacagaaaaacaacctagtttgtgaacaaaacaatgtaaatagccaaAAAAATACAAGGACAGGGTTTCACTTCAGTAGACTTTCTTTTCaagtaaattagaccaactttTATGCCTGTGCACAGCGCTTCTAAAAATGTAATCTTTCACTCAGCTCTTCACGTGCGCACAGTCCCCCAGCCAGGCTGTGTTGCAGAGCGAGGTGGAATAGGCTATATATtaccagctatgaaacaaaaACGGCAGAAATATTTTGAAAACAGCTAGTGCAGCATATATGTCACTGTAAATGTGATCAAACTTGACTTTTTATATTCACAAATGCGAGTGAAATACTTGCACTGTGAAGTCCTGACCACCCGGCGACATggctgggggaaaaaaaaaatccacatttGGCAGGCGTTCATTTTAGGCCCTGATTGTTTGCCTCCATTTATTGGGATGGTTGGACATCGTAGTAATGGTTCTCTTCAACGGGTGGTGCTGAAGGATCCATTCCACTCTGCTTCATTTGGACGGCGATGTCAAATAGGTAGTCATAACATTCACACATGGTCTTGGCTTTCTCCCAGGACTCCCCCCACACGTAGACGCCGTGGCGCCGGACGAGGACCGCACAGGAGTCTGGGTACTGCTCCATGGCCAGCGCCATGCGCTCCTTCAGGTCCCGCTCCTCCGGGGTGTTCTCAATGATGGGGACCACCAGGGTTTCATCATATCTGTAGTTGGTTTTGGAGGTGCCCTTGCGGATTCCCTTTATCATCTCCTGGTGAGTTATGCGGAACTCCTTGCCAGGATAAAACAGAGTTGCCATGACGGCAGCCTTGGAGTGGGTGTGGATGACGGCCTGCGCCGCTCTCATAGTGAAGGCATTCATGAACAGAGGGGTGCACTGGCTCTTCTTCAGGTTCTTCCAGGGGGGTGGGGAGCtgatgtctctctcctccacatcacagacaaacatgTCATCTGGCTGTAGTCTCTCCTTCTGCACTCCAGACGGGGCAATGTAGATCTGATCTCCACGTCTCAAACTTAGCCCTCCTCCTGTCCCAGTAACCCAGCCGAGTTGGTAGAAAAGACGACATAACTCTGGGATGAGAAGCCGTGGATGTTCCTTGTCCTGAGACTCCGTCGACTCGGAACCATTTTCCTTGTCTTCAATGGTGGCATCACAAACAGATGTCATTTTATTTTGGATAGGTGCAGAACGAACTGCTTTTTCAACCGGTGGAACCAGATTCTTCTTGCAAGTTCTCTCTTTTTCACCCGGTGGAACCAGATTCTTCTTGCGACCACGTCCTGGGAGGTTGACTACAACTCCATGGACAGCATGCTTCCTGATAACATTACGAA
>TU632930
CATTAACAGAGAGAGCTCACCCCTCATAGTGTATCATTCATTAACAGAGAGAGCTCACCTCTCAGTGTATCaatcATGAACAGAGAGCTCACCTCTCATAGTGAAGGCATTCATGAACAGAGGGGTGCACTGGCTCTTCTTCAGGTTCTTCCAGGGGGGTGGGGAGCtgatgtctctctcctccacatcacagacaaacatgTCATCTGGCTACAgggtgcaacacacacacaaaaaacatatcTCCAGAAACTGTCAAACTAAGTAGTCCAAGTTGGCTCTGATGATATGAAGGCAAAACACCAGCCCTGCACACCTGTAGTCTCTATGATGATATGAAGGCAAAACACCAGCCCTGCTCACCTGTAGTCTCTATGATGATATGAAGGCAAAACACCAGCCCTGCTCACCTGTAGTCTCTATGATGATATGAAGGTAAAACACCAGCCCTGCTCACCTGTAGTCTC
>TU632929
tttttttaccaGCCAGAATATTTTCCACAAAAATTACAACAAAACCAACAGATGagcatgctttgtaatgtttctaaaacaagtGTATTACTAGTAAGAAGTAAAATTGGTATATTAATTAAATTTTTAACCAAAATATCAGACAAAAATGTCCCACCTTTAAGGGAGGGAGGTTACCATGGCAACGCAAATCAGTATTGTTTCTGCCTGTGAGATTGACTAGTAGAAGCGTGGCCTTCTCTTCCCAAGCAGTTGAAACtcaaacacagaaaaacaacctagtttgtgaacaaaacaatgtaaatagccaaAAAAATACAAGGACAGGGTTTCACTTCAGTAGACTTTCTTTTCaagtaaattagaccaactttTATGCCTGTGCACAGCGCTTCTAAAAATGTAATCTTTCACTCAGCTCTTCACGTGCGCACAGTCCCCCAGCCAGGCTGTGTTGCAGAGCGAGGTGGAATAGGCTATATATtaccagctatgaaacaaaaACGGCAGAAATATTTTGAAAACAGCTAGTGCAGCATATATGTCACTGTAAATGTGATCAAACTTGACTTTTTATATTCACAAATGCGAGTGAAATACTTGCACTGTGAAGTCCTGACCACCCGGCGACATggctgggggaaaaaaaaaatccacatttGGCAGGCGTTCATTTTAGGCCCTGATTGTTTGCCTCCATTTATTGGGATGGTTGGACATCGTAGTAATGGTTCTCTTCAACGGGTGGTGCTGAAGGATCCATTCCACTCTGCTTCATTTGGACGGCGATGTCAAATAGGTAGTCATAACATTCACACATGGTCTTGGCTTTCTCCCAGGACTCCCCCCACACGTAGACGCCGTGGCGCCGGACGAGGACCGCACAGGAGTCTGGGTACTGCTCCATGGCCAGCGCCATGCGCTCCTTCAGGTCCCGCTCCTCCGGGGTGTTCTCAATGATGGGGACCACCAGGGTTTCATCATATCTACAGACACACATGTCAACGTCAGTGTGTGAGCAGAATGCATAGTCAATAAGGCCACTATCTAAAATCAAGTGTCAGCTTCCCCTGGATGAAAATGTGCCAGAATTGACAGGAGTTACAAGGTAACATCTGGATTCCCACATTCATTTCCATAAACTGCCAGGGCTGGACTGTTTCAGTGCAGACATTCACACTGTAGCACattggcaggtagcttagtgattagagtgttgggccagtaaccgtaagattgctggatcgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttccctgggcactgaagatgtggatgttgattaaggcagccccccgcacatctgattcagaggggttgggttaaatgtggaagacatatttcagttgaatacattcagttggacaactgactaggaaaTCCCCTTTCCCATTGAGCACTTATACGGCCGTCGTTGGCGCTGGAGgtgtcctCGCAACCTGCCTGCCTGGAGGTGTCCTAGCCACGTGCCCACCTGTAGTTGGTGCTGGAGGTAGGTGTCCTCACAACCTGCCCGCCCGTAGTTGGTGCTGGAGGTAGGTGTCCTCGCAACCTGCCCACCCGTagttggtgctggaggtgtcctAGCCACGTGCCCACCTGTAGTTGGTGCTGGAGGTAGGTGTCCTCACAACCTGCCCACCTGTagttggtgctggaggtgtcctCACCACGTACCGACCCGTagttggtgctggagGTGTCCCTGCCATGTGCCCACCCGTAGTTGGTGCTGGATGTGTCCTAGCCATGTGCCTACCTGTAGTTGGTTCTGGAGGTGCCCTAGCCATGTGCCTACCTGTagttggtgctggaggtgtcctAGCCATGTGCCTACCTGTAGTTGGTTCTGGAGGTGCCCTAGCCATGTGCCTACCTGTagttggtgctggaggtgtcctAGCCATGTGCCTACCTGTAGTTGGTTCTGGAGGTGCCCTTGCGGATTCCCTTTATCATCTCCTGGTGAGTTATGCGGAACTCCTTGCCAGGATAAAACAGAGTTGCCATGACGGCAGCCTTGGAGTGGGTGTGGATGACGGCCTGCGCCGCTGAGGAACAGGAGGGAGACAGTTAGCATGTTGGCCTATTCGTGGGTCTGTGTACAGCTCACCCCTCATAGACTATCAC

Function

NR:

description
PREDICTED: methylthioribulose-1-phosphate dehydratase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU632927 False 1623 TUCP 0.46 7 89974182 89981624
TU632930 False 467 lncRNA 0.47 2 89975378 89975882
TU632929 True 2189 TUCP 0.49 6 89975884 89981624

Neighbor

gene id symbol gene type direction distance location
LOC110526793 LOC106587778 coding downstream 9989 89956035 ~ 89965389 (-)
LOC118964962 chst1 coding downstream 414089 89556379 ~ 89561289 (-)
trnag-ucc NA coding downstream 580404 89394903 ~ 89394974 (-)
LOC110509922 LOC106563534 coding downstream 628947 89317125 ~ 89346431 (-)
LOC110526791 LOC104927744 coding downstream 707886 89227541 ~ 89267492 (-)
LOC110506981 dh12b coding upstream 281362 90257244 ~ 90267943 (-)
LOC118965054 NA coding upstream 325504 90301386 ~ 90303985 (-)
LOC110506215 ttc17 coding upstream 327236 90303118 ~ 90324307 (-)
trpm5 trpm5 coding upstream 384547 90360429 ~ 90403385 (-)
LOC118936665 kcnq1 coding upstream 470002 90445884 ~ 90495091 (-)
G558320 NA non-coding downstream 20290 89953593 ~ 89955088 (-)
G558348 NA non-coding downstream 24928 89948864 ~ 89950450 (-)
G558323 NA non-coding downstream 78463 89896609 ~ 89896915 (-)
G558245 NA non-coding downstream 111953 89863180 ~ 89863425 (-)
G558355 NA non-coding upstream 6586 89982468 ~ 89982700 (-)
G558356 NA non-coding upstream 7072 89982954 ~ 89983208 (-)
G558360 NA non-coding upstream 17046 89992928 ~ 89993610 (-)
G558364 NA non-coding upstream 27177 90003059 ~ 90003368 (-)
G558369 NA non-coding upstream 35890 90011772 ~ 90012056 (-)
G558246 LOC106562569 other downstream 107321 89865968 ~ 89868057 (-)
G558124 NA other downstream 254224 89720475 ~ 89722021 (-)
G558051 NA other downstream 353623 89621348 ~ 89621755 (-)
G557663 NA other downstream 815493 89159224 ~ 89159885 (-)
LOC110526751 LOC106562707 other downstream 2190026 87773201 ~ 87860425 (-)
G559123 NA other upstream 947216 90923098 ~ 90923835 (-)
G559162 NA other upstream 1014948 90990830 ~ 90992177 (-)
G559163 NA other upstream 1016554 90992436 ~ 90992949 (-)
LOC110511526 LOC106592072 other upstream 1280623 91248205 ~ 91286961 (-)
G559364 NA other upstream 1313210 91289092 ~ 91290337 (-)

Expression


Co-expression Network