G558724


Basic Information

Item Value
gene id G558724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90252050 ~ 90253670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU633447
actggctcaactctctaaccactagactacctactggttactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctgctggttactggctcaactctctaaccactagactacctgctggttactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggcccaactctctaaccactagactacctactggttactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctactggttactggctcaacactctaaccactagactacctaaacactctaaccactagactacctactggttactggctcaacactctaaccactagactacttactggttactggccc
>TU633449
cctaaacactctaaccactagactacctactggcccaactctctaaccactagactacctactggttactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctgctggttactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctgctggttactggctcaactctctaaccactagactacctactggttactggctcaacactctaaccactagactacctactggttactggctcaacactctaaccactagactacctactggttactggcccaactctctaaccactagactacctaaacactctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggttactggcccaactctctaaccactag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU633447 False 519 lncRNA 0.47 2 90252050 90253605
TU633449 True 564 lncRNA 0.47 2 90252843 90253670

Neighbor

gene id symbol gene type direction distance location
LOC110526793 LOC106587778 coding downstream 286661 89956035 ~ 89965389 (-)
LOC118964962 chst1 coding downstream 690761 89556379 ~ 89561289 (-)
trnag-ucc NA coding downstream 857076 89394903 ~ 89394974 (-)
LOC110509922 LOC106563534 coding downstream 905619 89317125 ~ 89346431 (-)
LOC110526791 LOC104927744 coding downstream 984558 89227541 ~ 89267492 (-)
LOC110506981 dh12b coding upstream 3574 90257244 ~ 90267943 (-)
LOC118965054 NA coding upstream 47716 90301386 ~ 90303985 (-)
LOC110506215 ttc17 coding upstream 49448 90303118 ~ 90324307 (-)
trpm5 trpm5 coding upstream 106759 90360429 ~ 90403385 (-)
LOC118936665 kcnq1 coding upstream 192214 90445884 ~ 90495091 (-)
G558723 NA non-coding downstream 1351 90249125 ~ 90250699 (-)
G558721 NA non-coding downstream 7411 90244329 ~ 90244639 (-)
G558720 NA non-coding downstream 9174 90242677 ~ 90242876 (-)
G558530 LOC106581475 non-coding downstream 12099 90239736 ~ 90239951 (-)
G558520 NA non-coding downstream 19530 90232292 ~ 90232520 (-)
G558725 NA non-coding upstream 476 90254146 ~ 90255496 (-)
G558730 NA non-coding upstream 12497 90266167 ~ 90266873 (-)
G558732 NA non-coding upstream 18088 90271758 ~ 90272113 (-)
G558734 NA non-coding upstream 20974 90274644 ~ 90275063 (-)
G558736 NA non-coding upstream 22965 90276635 ~ 90277043 (-)
G558339 LOC106587697 other downstream 270426 89974182 ~ 89981624 (-)
G558246 LOC106562569 other downstream 383993 89865968 ~ 89868057 (-)
G558124 NA other downstream 530896 89720475 ~ 89722021 (-)
G558051 NA other downstream 630295 89621348 ~ 89621755 (-)
G557663 NA other downstream 1092165 89159224 ~ 89159885 (-)
G559123 NA other upstream 669428 90923098 ~ 90923835 (-)
G559162 NA other upstream 737160 90990830 ~ 90992177 (-)
G559163 NA other upstream 738766 90992436 ~ 90992949 (-)
LOC110511526 LOC106592072 other upstream 1002835 91248205 ~ 91286961 (-)
G559364 NA other upstream 1035422 91289092 ~ 91290337 (-)

Expression


Co-expression Network