G558624 (LOC106562471)


Basic Information

Item Value
gene id G558624
gene name LOC106562471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90446102 ~ 90447856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU633312
ATTGCATTTGAACATCTACATAAAAGCCCTCACCCCGACCCCAACACTTCAGTTTATGTTTCGACAGTACATACATGGGAGAGCCTTTTGAAAACATAGTGTTATTATAACTGCCTACTTTTAGTATGGACATCATTCCATATTCACCATCAAAAAACATAGCTACCTTTATACTGAAGTGTTGGCTTTGCAGATCaacatatttcaaatcaaatagaACACTACCGTTACTTTTTGACGTTGTAACATTCCAATGCTCTTACACAGCCGGAATAATGTTATTATATGTGCACTCTAATCTTATTTCCTTTTGATTGAGGGGAAAGCGTTTGAATATGGCGCTTGCTCACATTTCCCCCTGGAACATTGACAATTGCAATAAATGAGAATTCAGAATCATAATCATATCCAGGATCTATGAAAAATATGTCCCGTCGGTGTGTCTAGCTTGTCTGGCTTGTCCTGTAGGCTGAGGCGCTGTTCTGTTCTAGGGAAGGGAGCCCTGCTCGCTATCTCGCTCTCCAACCAAGGTGCATGAATTGAGGAGCAAActgaagtagagaggagaaatagCAACTCTTGGGAGGACATTGgaattaaatgaaataatcttTGTTTAAAGGCCAAAAGCTGAATCGTGTTGGTTCCACTTTtaacaatattttttaaatatttttatttcattcGATTGTCCTCCAAGAGTTGCTAAATCTCCTGTCTATACGGTTCTTCTCtagggcagggtttcccaaacttggtcctggggcccccactgagtgcacatttagttttttgtcctagcactacacagctggttCATTATCATGAAGAACACTGATCTCAGAataagacaaagagagaaagcgtCAAAATGGTTTTGGTGTTTCTCTGCATCAGGAGCTCTTGTcctggctgaggctggggttgaggGTGGATGGAGGGTCGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGCGGTGGAGAGCTGCTCGTAGCTGGGTAGGCTATCCTGGCTGGGGACACCTGCCCCACCCTGTGACCTCCTCCTACCTTGCCCCTGTGCTCCCCCCATGTCCCCCTGCCCCTGGCTTGTCCCAGACAACAGCTGGGTAAGGGACTCTGCGATTTGGTTGAGTGTCTGGTCCATGCGTTGTATCTGTAAGTGGATGGACAAACAGAAAAG
>TU633316
ATTGCATTTGAACATCTACATAAAAGCCCTCACCCCGACCCCAACACTTCAGTTTATGTTTCGACAGTACATACATGGGAGAGCCTTTTGAAAACATAGTGTTATTATAACTGCCTACTTTTAGTATGGACATCATTCCATATTCACCATCAAAAAACATAGCTACCTTTATACTGAAGTGTTGGCTTTGCAGATCaacatatttcaaatcaaatagaACACTACCGTTACTTTTTGACGTTGTAACATTCCAATGCTCTTACACAGCCGGAATAATGTTATTATATGTGCACTCTAATCTTATTTCCTTTTGATTGAGGGGAAAGCGTTTGAATATGGCGCTTGCTCACATTTCCCCCTGGAACATTGACAATTGCAATAAATGAGAATTCAGAATCATAATCATATCCAGGATCTATGAAAAATATGTCCCGTCGGTGTGTCTAGCTTGTCTGGCTTGTCCTGTAGGCTGAGGCGCTGTTCTGTTCTAGGGAAGGGAGCCCTGCTCGCTATCTCGCTCTCCAACCAAGGTGCATGAATTGAGGAGCAAActgaagtagagaggagaaatagCAACTCTTGGGAGGACATTGgaattaaatgaaataatcttTGTTTAAAGGCCAAAAGCTGAATCGTGTTGGTTCCACTTTtaacaatattttttaaatatttttatttcattcGATTGTCCTCCAAGAGTTGCTAAATCTCCTGTCTATACGGTTCTTCTCtagggcagggtttcccaaacttggtcctggggcccccactgagtgcacatttagttttttgtcctagcactacacagctggttCATTATCATGAAGAACACTGATCTCAGAataagacaaagagagaaagcgtCAAAATGGTTTTGGTGTTTCTCTGCATCAGGAGCTCTTGTcctggctgaggctggggttgaggGTGGATGGAGGGTCGATTCAGGAGCTCTTGTcctggctgagGCTGGGGTTGAGGGTGGATGGAGGGTCAATTCAGGAGCTCTTGTcctggctgaggctggggttgaggGTGGATGGATGGTCGATTCAGGAGCTCTTCTcctggctgaggctggggttgaggggtggatggatggtcgATTCAGGAGCTCTTGTCccggctgaggctggggttgaggggtggatggatggttgATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagagtcGATTCAGGAGCTCTTGTCTTGGCTGAGGTTGAGgttgaggggtggatggagggtcGCGGTGGAGAGCTGCTCGTAGCTGGGTAGGCTATCCTGGCTGGGGACACCTGCCCCACCCTGTGACCTCCTCCTACCTTGCCCCTGTGCTCCCCCCATGTCCCCCTGCCCCTGGCTTGTCCCAGACAACAGCTGGGTAAGGGACTCTGCGATTTGGTTGAGTGTCTGGTCCATGCGTTGTATCTGTAAGTGGATGGACAAACAGAAAAG

Function

NR:

description
potassium voltage-gated channel subfamily KQT member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU633312 False 1263 lncRNA 0.46 3 90446102 90447856
TU633316 True 1536 TUCP 0.48 2 90446102 90447856

Neighbor

gene id symbol gene type direction distance location
LOC110506992 LOC106562470 coding upstream 3436 90441506 ~ 90442666 (+)
LOC118964965 LOC106562863 coding upstream 21436 90417861 ~ 90424832 (+)
LOC110506983 traf6 coding upstream 92754 90345783 ~ 90354922 (+)
LOC110506986 LOC106592686 coding upstream 100459 90331557 ~ 90345643 (+)
LOC118964964 LOC106562578 coding upstream 116778 90324347 ~ 90329324 (+)
LOC110526798 cars coding downstream 227659 90675515 ~ 90698529 (+)
LOC110527007 pex16 coding downstream 266769 90714625 ~ 90727022 (+)
LOC110506219 LOC106562554 coding downstream 311636 90759492 ~ 90780813 (+)
LOC110506998 LOC106562604 coding downstream 350164 90798020 ~ 90815693 (+)
LOC110526809 LOC106562822 coding downstream 390266 90838122 ~ 90932867 (+)
G558611 NA non-coding upstream 36910 90408977 ~ 90409192 (+)
G558610 NA non-coding upstream 37817 90408071 ~ 90408285 (+)
G558595 NA non-coding upstream 67921 90377781 ~ 90378181 (+)
G558567 NA non-coding upstream 85918 90359421 ~ 90360184 (+)
G558565 NA non-coding upstream 87569 90358015 ~ 90358533 (+)
G558636 NA non-coding downstream 23682 90471538 ~ 90472081 (+)
G558656 NA non-coding downstream 77588 90525444 ~ 90529249 (+)
G558665 NA non-coding downstream 88271 90536127 ~ 90536628 (+)
G558666 NA non-coding downstream 88965 90536821 ~ 90537115 (+)
G558677 NA non-coding downstream 117610 90565466 ~ 90566265 (+)
G558568 NA other upstream 141635 90301409 ~ 90304467 (+)
G558538 NA other upstream 185934 90259612 ~ 90260168 (+)
G558474 NA other upstream 320247 90125189 ~ 90125855 (+)
G559027 NA other downstream 489061 90936917 ~ 90938074 (+)
G559047 NA other downstream 542930 90990786 ~ 90992088 (+)
LOC110518689 leo1 other downstream 594775 91042534 ~ 91063779 (+)

Expression


Co-expression Network